diff options
Diffstat (limited to 'gnu/packages/patches/htslib-for-stringtie.patch')
| -rw-r--r-- | gnu/packages/patches/htslib-for-stringtie.patch | 26 |
1 files changed, 0 insertions, 26 deletions
diff --git a/gnu/packages/patches/htslib-for-stringtie.patch b/gnu/packages/patches/htslib-for-stringtie.patch deleted file mode 100644 index 3e6cd5bb63..0000000000 --- a/gnu/packages/patches/htslib-for-stringtie.patch +++ /dev/null @@ -1,26 +0,0 @@ -These changes are commits d7e357946ead219b81cc1becbe0de8a99d96ca84 and -8ed0daa39bc662defa99507f926815431056543a in -https://github.com/samtools/htscodecs. The stringtie package expects these -changes to have been applied. - -diff -ru htslib-1.12/htscodecs/htscodecs/tokenise_name3.c stringtie-2.2.0/htslib/htscodecs/htscodecs/tokenise_name3.c ---- a/htscodecs/htscodecs/tokenise_name3.c 2021-02-22 13:07:06.000000000 +0100 -+++ b/htscodecs/htscodecs/tokenise_name3.c 2021-12-04 19:27:39.000000000 +0100 -@@ -211,7 +211,7 @@ - if (!ctx) return NULL; - ctx->max_names = max_names; - pthread_setspecific(tok_key, ctx); -- } else if (ctx->max_names < max_names) { -+ } else if (ctx->max_names < max_names+1) { - ctx = realloc(ctx, sizeof(*ctx) + ++max_names*sizeof(*ctx->lc)); - if (!ctx) return NULL; - ctx->max_names = max_names; -@@ -1058,6 +1058,8 @@ - tok = decode_token_type(ctx, ntok); - //fprintf(stderr, "Tok %d = %d\n", ntok, tok); - -+ ctx->lc[cnum].last_ntok = 0; -+ - switch (tok) { - case N_CHAR: - if (len+1 >= name_len) return -1;
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