diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 330 |
1 files changed, 214 insertions, 116 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 03f2828cfc..e7b3b98c96 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -165,6 +165,7 @@ ;;; Copyright © 2025 Nguyễn Gia Phong <mcsinyx@disroot.org> ;;; Copyright © 2025, Cayetano Santos <csantosb@inventati.org> ;;; Copyright © 2025 Jake Forster <jakecameron.forster@gmail.com> +;;; Copyright © 2025 Luis Felipe López Acevedo <sirgazil@zoho.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -458,7 +459,7 @@ compare against a vast section of other version formats.") (("^minimum-version =.*") ""))))))) (propagated-inputs (list python-numpy)) (native-inputs - (list cmake pybind11 python-pytest python-scikit-build-core)) + (list cmake-minimal pybind11 python-pytest python-scikit-build-core)) (home-page "https://github.com/scikit-hep/awkward-1.0") (synopsis "CPU kernels and compiled extensions for Awkward Array") (description "Awkward CPP provides precompiled routines for the awkward @@ -884,6 +885,24 @@ comparison operators, as defined in the original processes, in parallel, in the console, with an interactive TUI.") (license license:expat))) +(define-public python-orderly-set + (package + (name "python-orderly-set") + (version "5.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "orderly_set" version)) + (sha256 + (base32 "1kp64m0nabhhb0zxr4f8idrmniraahnfwq41gx7adbyqwk48awg8")))) + (build-system pyproject-build-system) + (native-inputs (list python-flit-core python-pytest)) + (home-page "https://github.com/seperman/orderly-set") + (synopsis "Multiple implementations of Ordered Set") + (description "Orderly Set is a package containing multiple implementations +of Ordered Set.") + (license license:expat))) + (define-public python-pastel (package (name "python-pastel") @@ -930,6 +949,42 @@ your terminal.") edit distance algorithm for Python in Cython for high performance.") (license license:bsd-3))) +(define-public python-safety-schemas + (package + (name "python-safety-schemas") + (version "0.0.14") + (source + (origin + (method url-fetch) + (uri (pypi-uri "safety_schemas" version)) + (sha256 + (base32 "0smgszbd3nb7jh61cgpycqhcvfwwdyaai5amw8mmf6g9b5x3z5a9")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "-k" (string-join + ;; These tests are failing for unknown reasons. + ;; (AssertionError). + (list "not test_model[ConfigModel-ConfigModel]" + "test_model[MetadataModel-MetadataModel]" + "test_model[PolicyFileModel-PolicyFileModel]" + "test_model[ProjectModel-ProjectModel]" + "test_model[ReportModel-ReportModel]") + " and not ")))) + (propagated-inputs (list python-dparse + python-packaging + python-pydantic-2 + python-ruamel.yaml + python-typing-extensions)) + (native-inputs (list python-deepdiff python-hatchling python-pytest)) + ;; Source code is not yet published outside of PyPI: + ;; https://github.com/pyupio/safety/issues/494 + (home-page "https://pypi.org/project/safety-schemas/") + (synopsis "Schemas for Safety tools") + (description "This package contains models and schemas used by Safety.") + (license license:expat))) + (define-public python-senf (package (name "python-senf") @@ -1175,6 +1230,37 @@ attribution. It uses similarity detection algorithms to compare code files and highlight matching sections.") (license license:agpl3+))) +(define-public python-wheel-filename + (package + (name "python-wheel-filename") + (version "1.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "wheel_filename" version)) + (sha256 + (base32 "1zcqq8mydjjrk8x5xlm53bavs51jm40nz42a7500pd6bbm31r2c7")))) + (build-system pyproject-build-system) + (native-inputs (list python-hatchling python-pytest python-pytest-cov)) + (home-page "https://github.com/wheelodex/wheel-filename") + (synopsis "Parse wheel filenames") + (description + "This software allows you to verify +@url{https://packaging.python.org/en/latest/specifications/binary-distribution-format/, wheel} +filenames and parse them into their component fields. + +This package adheres strictly to the standard, with the following +exceptions: + +@itemize @bullet +@item +Version components may be any sequence of the relevant set of +characters; they are not verified for PEP 440 compliance. +@item +The @file{.whl} file extension is matched case-insensitively. +@end itemize") + (license license:expat))) + (define-public python-xmldiff (package (name "python-xmldiff") @@ -23099,23 +23185,16 @@ implementation has been adapted, improved, and fixed from Molten.") (define-public python-shellingham (package (name "python-shellingham") - (version "1.5.1") + (version "1.5.4") (source (origin (method url-fetch) (uri (pypi-uri "shellingham" version)) (sha256 - (base32 "0iawv24xx6vhwbhqlxyyg901f8pf6abqyfg0711v1bvlipx83g21")))) - (build-system python-build-system) - (arguments - '(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "python" "-m" "pytest" "-v"))))))) + (base32 "1ph46hv920ha9clwxgrllbrphh0ww4v4pjmkbb9mnzj8kmrs1g4d")))) + (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-mock)) + (list python-pytest python-pytest-mock python-setuptools python-wheel)) (home-page "https://github.com/sarugaku/shellingham") (synopsis "Tool to detect surrounding shell") (description @@ -24663,28 +24742,28 @@ JSON) codec.") (define-public python-nltk (package (name "python-nltk") - (version "3.6.2") - (source (origin - (method url-fetch) - (uri (pypi-uri "nltk" version ".zip")) - (sha256 - (base32 - "1sq32lwgij9h8rsksymnxxr7bqfw3vgx5ijw4azbj6k2xnmmdmap")))) - (build-system python-build-system) + (version "3.9.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nltk" version)) + (sha256 + (base32 "0s78gayd45vl1wvpa0a44ydij6ybb7xfar8jz2j8kgg47nyjglc7")))) + (build-system pyproject-build-system) (arguments - '(;; The tests require some extra resources to be downloaded. - ;; TODO Try packaging these resources. - #:tests? #f)) - (propagated-inputs - (list python-click python-joblib python-regex python-tqdm)) - (native-inputs - (list unzip)) - (home-page "http://nltk.org/") + ;; Tests require some extra resources to be downloaded. + ;; TODO Try packaging these resources. + '(#:tests? #f)) + (propagated-inputs (list python-click python-joblib python-regex + python-tqdm)) + (native-inputs (list python-setuptools python-wheel)) + (home-page "https://www.nltk.org/") (synopsis "Natural Language Toolkit") - (description "It provides interfaces to over 50 corpora and lexical - resources such as WordNet, along with a suite of text processing libraries - for classification, tokenization, stemming, tagging, parsing, and semantic - reasoning, wrappers for natural language processing libraries.") + (description + "NLTK provides interfaces to over 50 corpora and lexical resources such as +WordNet, along with a suite of text processing libraries for classification, +tokenization, stemming, tagging, parsing, and semantic reasoning, wrappers for +natural language processing libraries.") (license license:asl2.0))) (define-public python-pymongo @@ -28615,35 +28694,21 @@ source bytes using the UTF-8 encoding and then rewrites Python 3.6 style (define-public python-typer (package (name "python-typer") - (version "0.6.1") + (version "0.16.0") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/tiangolo/typer") + (url "https://github.com/fastapi/typer") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1knv353qhkl2imav3jfp6bgq47m8wkkqhq1dzmqg2sv8rsy7zgl7")))) + (base32 "1axd3840b2vipfp9l36cnh5ipbsladizmjadgsnpnk502qily7sq")))) (build-system pyproject-build-system) (arguments (list - #:test-flags - '(let ((disabled-tests (list "test_show_completion" - "test_install_completion"))) - (list "-k" (string-append "not " - (string-join disabled-tests - " and not ")))) #:phases #~(modify-phases %standard-phases - ;; Unfortunately, this doesn't seem to be enough to fix these two - ;; tests, but we'll patch this anyway. - (add-after 'unpack 'patch-shell-reference - (lambda _ - (substitute* "tests/test_completion/test_completion.py" - (("\"bash\"") (string-append "\"" (which "bash") "\"")) - (("\"/bin/bash\"") - (string-append "\"" (which "bash") "\""))))) (add-before 'check 'pre-check (lambda* (#:key tests? #:allow-other-keys) (when tests? @@ -28651,12 +28716,14 @@ source bytes using the UTF-8 encoding and then rewrites Python 3.6 style ;; This is for completion tests (with-output-to-file "/tmp/.bashrc" (lambda _ (display "# dummy"))))))))) - (propagated-inputs - (list python-click)) - (native-inputs - (list python-coverage python-flit python-pytest python-rich - python-shellingham)) - (home-page "https://github.com/tiangolo/typer") + (propagated-inputs (list python-click + python-rich + python-shellingham + python-typing-extensions)) + (native-inputs (list python-coverage ; this is required in tests + python-pdm-backend + python-pytest)) + (home-page "https://github.com/fastapi/typer") (synopsis "Typer builds CLI based on Python type hints") (description "Typer is a library for building CLI applications. It's based on Python @@ -29459,23 +29526,28 @@ user-space file systems in Python.") ("catch" ,catch2-1) ("eigen" ,eigen))) (arguments - `(#:configure-flags - (list (string-append "-DCATCH_INCLUDE_DIR=" - (assoc-ref %build-inputs "catch") - "/include/catch")) - - #:phases (modify-phases %standard-phases - (add-after 'install 'install-python - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (with-directory-excursion "../source" - (setenv "PYBIND11_USE_CMAKE" "yes") - (invoke "python" "setup.py" "install" - "--single-version-externally-managed" - "--root=/" - (string-append "--prefix=" out))))))) - - #:test-target "check")) + (list + #:configure-flags + #~(list (string-append "-DCATCH_INCLUDE_DIR=" + (assoc-ref %build-inputs "catch") + "/include/catch")) + #:modules '((guix build cmake-build-system) + ((guix build gnu-build-system) #:prefix gnu:) + (guix build utils)) + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:rest args) + (apply (assoc-ref gnu:%standard-phases 'check) args))) + (add-after 'install 'install-python + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (with-directory-excursion "../source" + (setenv "PYBIND11_USE_CMAKE" "yes") + (invoke "python" "setup.py" "install" + "--single-version-externally-managed" + "--root=/" + (string-append "--prefix=" out))))))))) (home-page "https://github.com/pybind/pybind11/") (synopsis "Seamless operability between C++11 and Python") (description @@ -31744,7 +31816,7 @@ Its algorithms are based on the kakasi library, which is written in C.") (list pkg-config python-meson-python meson - ninja + ninja/pinned patchelf python-setuptools python-sphinx @@ -34249,19 +34321,16 @@ dates in almost any string formats commonly found on web pages.") (define-public python-dparse (package (name "python-dparse") - (version "0.5.1") + (version "0.6.4") (source - (origin - (method url-fetch) - (uri (pypi-uri "dparse" version)) - (sha256 - (base32 - "0rzkg3nymsbwdjc0ms2bsajkda02jipwyp3xk97qj71f21lz3dd1")))) - (build-system python-build-system) - (native-inputs - (list python-pytest)) - (propagated-inputs - (list python-packaging python-pyyaml python-toml)) + (origin + (method url-fetch) + (uri (pypi-uri "dparse" version)) + (sha256 + (base32 "06i069hij4i53hikrsv332h2ibwfchr42b68hii6rhzdwcwrrclh")))) + (build-system pyproject-build-system) + (native-inputs (list python-hatchling python-pytest)) + (propagated-inputs (list python-packaging python-toml)) (home-page "https://github.com/pyupio/dparse") (synopsis "Parser for Python dependency files") (description "This package provides a parser for Python dependency files.") @@ -34296,31 +34365,55 @@ facility for filtering those results.") (define-public python-safety (package (name "python-safety") - (version "1.9.0") + (version "3.6.0") (source - (origin - (method url-fetch) - (uri (pypi-uri "safety" version)) - (sha256 - (base32 - "1j801xsxfzavjbzhhc934awvnk1b7jc0qsw3jp3ys0241mlj1gr3")))) - (build-system python-build-system) + (origin + (method url-fetch) + (uri (pypi-uri "safety" version)) + (sha256 + (base32 "1qzplv044yfr8w41h0qmjc8lj2admk029azsqbax70wzd4kzh858")))) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'disable-tests - (lambda _ - (substitute* "tests/test_safety.py" - ;; requires network - (("def test_check_live") "def _test_check_live")) - #t))))) - (propagated-inputs - (list python-click python-dparse python-packaging python-requests)) + (list + #:test-flags + #~(list "-k" (string-join + ;; test_announcements fails with AssertionError. + (list "not test_announcements_if_is_not_tty" + ;; Tests below need a network connection. + "test_check_live" + "test_check_live_cached" + "test_get_packages_licenses_without_api_key") + " and not ")) + #:phases #~(modify-phases %standard-phases + (add-before 'check 'set-home ; some tests run mkdir + (lambda _ + (setenv "HOME" "/tmp")))))) + (native-inputs (list nss-certs-for-test python-hatchling python-pytest)) + (propagated-inputs (list python-authlib + python-click + python-dparse + python-filelock + python-httpx + python-jinja2 + python-marshmallow + python-nltk + python-packaging + python-psutil + python-pydantic-2 + python-requests + python-ruamel.yaml + python-safety-schemas + python-tenacity + python-tomli + python-tomlkit + python-typer + python-typing-extensions)) (home-page "https://github.com/pyupio/safety") (synopsis "Check installed dependencies for known vulnerabilities") - (description "Safety checks installed dependencies for known vulnerabilities. + (description + "Safety checks installed dependencies for known vulnerabilities. By default it uses the open Python vulnerability database Safety DB.") - (license license:expat))) + (license license:expat))) (define-public python-pypandoc (package @@ -35500,7 +35593,7 @@ and frame grabber interface.") (list cmake-minimal gfortran git-minimal/pinned ;for tests - ninja + ninja/pinned python-coverage python-cython python-hatchling @@ -38770,26 +38863,31 @@ object, which can be useful if you want to force your objects into a table.") (define-public python-deepdiff (package (name "python-deepdiff") - (version "6.3.0") + (version "8.5.0") (source (origin (method url-fetch) (uri (pypi-uri "deepdiff" version)) (sha256 (base32 - "0i5nnb3nppi2vgbhiakpxiagyhx7l1f50hzcl8fcgica4bkz2fva")))) + "1l8wvirgif61cqwsqzd3kf8slzlrjnffmqxnrfwxak4dz8lkbpd4")))) (build-system pyproject-build-system) - (propagated-inputs (list python-ordered-set)) + (arguments + ;; Ignore Polars test (not packaged). + (list #:test-flags #~(list "-k" "not test_polars"))) + (propagated-inputs (list python-click ; for CLI + python-pyyaml ; for CLI + python-orderly-set + python-orjson)) ; for optimization (native-inputs - (list python-click - python-dateutil + (list python-flit-core python-jsonpickle - python-mock python-numpy + python-pandas + python-pydantic-2 python-pytest - python-pyyaml - python-setuptools - python-wheel - python-toml)) + python-pytest-benchmark + python-pytz + python-tomli-w)) (home-page "https://github.com/seperman/deepdiff") (synopsis "Deep difference and search of any Python object/data") (description |