diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 238 |
1 files changed, 170 insertions, 68 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 98abf038a5..b650b71f3b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -137,6 +137,8 @@ ;;; Copyright © 2023 Bruno Victal <mirai@makinata.eu> ;;; Copyright © 2023 Kaelyn Takata <kaelyn.alexi@protonmail.com> ;;; Copyright © 2023 Dominik Delgado Steuter <d@delgado.nrw> +;;; Copyright © 2023 Ivan Vilata-i-Balaguer <ivan@selidor.net> +;;; Copyright © 2023 Ontje Lünsdorf <ontje.luensdorf@dlr.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -1064,6 +1066,38 @@ MySQL databases, using an API that is compliant with the Python Database API Specification v2.0 (PEP 249).") (license license:gpl2))) +(define-public python-pdoc + (package + (name "python-pdoc") + (version "13.0.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mitmproxy/pdoc") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0gxkw607nrd67ck4w8jri9vfrm5g60qvp8b134m8zkiphbxjnx0l")))) + (build-system pyproject-build-system) + (native-inputs (list python-pytest python-jinja2 python-pygments)) + (arguments + (list + ;; Some tests fail, presumably because of slight version mismatches of + ;; the dependencies. + #:test-flags + '(list "-k" (string-append "not test_var_with_raising_repr and " + "not test_smoke[mock] and " + "not test_snapshots[html")))) + (home-page "https://pdoc.dev/") + (synopsis "API documentation for Python projects") + (description "pdoc auto-generates API documentation that follows your +project's Python module hierarchy. It requires no configuration, has +first-class support for type annotations, cross-links between identifiers, +comes with an integrated live-reloading web server, uses customizable HTML +templates, understands numpydoc and Google-style docstrings.") + (license license:unlicense))) + (define-public python-py4j (package (name "python-py4j") @@ -1715,14 +1749,22 @@ attacks or network discovery.") (define-public python-shapely (package (name "python-shapely") - (version "1.8.4") + (version "2.0.1") (source (origin (method url-fetch) - (uri (pypi-uri "Shapely" version)) + (uri (pypi-uri "shapely" version)) (sha256 - (base32 "130rqd0czi128wm5pdn47v4m6czxd7pkzanbya8q48gsm8ffb5d1")))) - (build-system python-build-system) + (base32 "14v88k0y7qhp8n5clip6w96pkdzrfqa2hsjkhpy9gkifwyiv39k6")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-before 'check 'build-extensions + (lambda _ + ;; Cython extensions have to be built before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs (list python-cython python-matplotlib python-pytest python-pytest-cov)) @@ -1730,25 +1772,6 @@ attacks or network discovery.") (list geos)) (propagated-inputs (list python-numpy)) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-geos-path - (lambda* (#:key inputs #:allow-other-keys) - (let ((geos (assoc-ref inputs "geos")) - (glibc (assoc-ref inputs ,(if (%current-target-system) - "cross-libc" "libc")))) - (substitute* '("shapely/geos.py" "shapely/_buildcfg.py") - (("_lgeos = load_dll\\('geos_c', fallbacks=.*\\)") - (string-append "_lgeos = load_dll('geos_c', fallbacks=['" - geos "/lib/libgeos_c.so'])")) - (("free = load_dll\\('c'\\)\\.free") - (string-append "free = load_dll('c', fallbacks=['" - glibc "/lib/libc.so.6']).free")) - (("free = load_dll\\('c', fallbacks=.*\\)\\.free") - (string-append "free = load_dll('c', fallbacks=['" - glibc "/lib/libc.so.6']).free")))) - #t))))) (home-page "https://github.com/Toblerity/Shapely") (synopsis "Library for the manipulation and analysis of geometric objects") (description "Shapely is a Python package for manipulation and analysis of @@ -3828,6 +3851,39 @@ matplotlib plots or supply colors for a web application.") syntax.") (license license:x11))) +(define-public python-parsley + (package + (name "python-parsley") + (version "1.3") + (source (origin + ;; The source distributed on PyPI is outdated. + (method git-fetch) + (uri (git-reference + (url "https://github.com/pyga/parsley") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0550rw65ygqzbjc8a66hs355pzbx727kbn20dssdb6ls846gw2qs")))) + (build-system pyproject-build-system) + (arguments + (list + ;; XXX: Check why these 3 tests fail. + #:test-flags #~(list "-k" + (string-append "not test_sending_empty_netstring" + " and not test_sending_one_netstring" + " and not test_sending_two_netstrings")))) + (native-inputs (list python-pytest python-twisted)) + (home-page "https://launchpad.net/parsley") + (synopsis "Parsing and pattern matching Python library") + (description + "Parsley is a parsing library using PEG algorithm, so each expression in +the grammar rules works like a Python expression. In particular, alternatives +are evaluated in order, unlike table-driven parsers such as yacc, bison or PLY. +Parsley is an implementation of OMeta, an object-oriented pattern-matching +language.") + (license license:expat))) + (define-public python-polib (package (name "python-polib") @@ -3906,6 +3962,28 @@ a certain expected condition.") Cython for speed.") (license license:expat))) +(define-public python-portalocker + (package + (name "python-portalocker") + (version "2.7.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "portalocker" version)) + (sha256 + (base32 + "0lawjm736vs86wlnxc3qqh37l11z0yx81xq3dmrw33m86kaq2bh3")))) + (build-system pyproject-build-system) + (native-inputs (list python-pytest + python-pytest-cov + python-pytest-mypy + python-pytest-timeout + python-redis)) + (home-page "https://github.com/WoLpH/portalocker") + (synopsis "Python library for file locking") + (description "Portalocker is a library to provide an easy API to file +locking..") + (license license:bsd-3))) + (define-public python-poyo (package (name "python-poyo") @@ -4086,6 +4164,33 @@ accuracy scores for various music/audio information retrieval/signal processing tasks.") (license license:expat))) +(define-public python-mizani + (package + (name "python-mizani") + (version "0.9.2") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/has2k1/mizani") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "13aisfc98nvypb4mglpdphp2r627cjzpdriw4dhlx55f3b2m0dza")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-matplotlib python-numpy python-pandas python-scipy)) + (native-inputs + (list python-setuptools python-pytest python-pytest-cov tzdata)) + (home-page "https://github.com/has2k1/mizani") + (synopsis "Create data visualizations in Python") + (description + "Mizani is a Python package for creating data visualizations. It +provides functions and tools to help with the creation of visually appealing +and informative visualizations, including scales, transformations and color +palettes.") + (license license:bsd-3))) + (define-public python-pafy (package (name "python-pafy") @@ -6811,13 +6916,13 @@ writing C extensions for Python as easy as Python itself.") ;; Cython 3 is not officially released yet, so distinguish the name ;; for now. (name "python-cython-next") - (version "3.0.0a10") + (version "3.0.0b2") (source (origin (method url-fetch) (uri (pypi-uri "Cython" version)) (sha256 (base32 - "17fqacrpis05w1rpi7d7sbimrk20xf8h6d3vrz5nf6ix3899abil")))) + "0mb7gpavs87am29sbk6yqznsybxj9dk4fwj4370j9sbrcmjq0hkc")))) (properties '()))) ;; NOTE: when upgrading numpy please make sure that python-numba, @@ -11740,13 +11845,13 @@ applications.") (define-public python-pyzmq (package (name "python-pyzmq") - (version "25.0.2") + (version "25.1.0") (source (origin (method url-fetch) (uri (pypi-uri "pyzmq" version)) (sha256 - (base32 "0jai5sbd4ypihsvr4ikq6d93nkmxwv53598sh24dqs78f2xip33b")) + (base32 "0mw9zf0h9sgn2cchw24vyxgyi2nfpyfacr0mh072hdjx8qii1i40")) (snippet #~(begin (use-modules (guix build utils)) @@ -11774,17 +11879,16 @@ applications.") (lambda _ ;; FIXME: The test_draft.TestDraftSockets test fails with: ;; zmq.error.Again: Resource temporarily unavailable - (delete-file "zmq/tests/test_draft.py") - ;; These tests fail for unknown reasons (see: - ;; https://github.com/zeromq/pyzmq/issues/1853). - (delete-file "zmq/tests/test_auth.py") - (delete-file "zmq/tests/test_zmqstream.py"))) + (delete-file "zmq/tests/test_draft.py"))) (add-before 'check 'build-extensions (lambda _ ;; Cython extensions have to be built before running the tests. - (invoke "python" "setup.py" "build_ext" "--inplace")))))) - (inputs - (list zeromq)) + (invoke "python" "setup.py" "build_ext" "--inplace"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv"))))))) + (inputs (list zeromq)) (native-inputs (list pkg-config python-cython @@ -17925,13 +18029,13 @@ to occurrences in strings and comments.") (define-public python-py3status (package (name "python-py3status") - (version "3.21") + (version "3.50") (source (origin (method url-fetch) (uri (pypi-uri "py3status" version)) (sha256 - (base32 "16z8zq83hxy48g6hh4xczbdz50qvxv9k1aahr4fqq7jis60cc262")))) + (base32 "0j2dx9lzpic15r8p0r0s3jmcskxpacahxl640b4864ldn5rlnh9d")))) (build-system python-build-system) (inputs (list file)) @@ -25147,20 +25251,33 @@ they use the same path.") (define-public python-blosc (package (name "python-blosc") - (version "1.5.1") + (version "1.11.1") (source (origin (method url-fetch) (uri (pypi-uri "blosc" version)) (sha256 (base32 - "1cm91c6r431yla2mbs4895bgiianjf30dfz14vvv99dslygd65jw")))) + "0xmjs28sgpnb940zrhw010dq2m9d8a5h4fgnjyk6645fgfr1j8f2")) + (snippet + #~(begin (use-modules (guix build utils)) + (delete-file-recursively "blosc/c-blosc"))))) (build-system python-build-system) - ;; FIXME: all tests pass, but then this error is printed: - ;; TypeError: calling <function run at 0x7ffff2568d90> returned None, not a test - (arguments '(#:tests? #f)) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'find-blosc + (lambda* (#:key inputs #:allow-other-keys) + (setenv "USE_SYSTEM_BLOSC" "1") + (setenv "Blosc_ROOT" #$(this-package-input "c-blosc")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "blosc.test"))))))) (propagated-inputs - (list python-numpy)) + (list python-scikit-build python-numpy)) + (inputs (list c-blosc)) + (native-inputs (list cmake-minimal)) (home-page "https://github.com/blosc/python-blosc") (synopsis "Python wrapper for the Blosc data compressor library") (description "Blosc is a high performance compressor optimized for binary @@ -25306,6 +25423,7 @@ parentdir_prefix = dask- (propagated-inputs (list python-cloudpickle python-fsspec + python-importlib-metadata ;needed at runtime for dask/_compatibility.py python-numpy python-packaging python-pandas @@ -25450,26 +25568,15 @@ RFC 8265 and RFC 8266.") (define-public python-absl-py (package (name "python-absl-py") - (version "0.6.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (pypi-uri "absl-py" version)) (sha256 (base32 - "1mp9lk0b2qa37b7y6ak4lvf6ifw2ylyy6bkf9ik77md3j4xrwlc7")))) + "0ga3b0m8lfsv1m3260p83lhis52yvz3d42q8gip4gfj823849hnj")))) (build-system pyproject-build-system) - (arguments - (list - #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'patch-version-check - (lambda _ - ;; Python 3.10 is indeed more recent than Python 3.4. - (substitute* "setup.py" - ((" or py_version\\[0\\] == '3'.*") ":"))))))) - (propagated-inputs - (list python-six)) (home-page "https://github.com/abseil/abseil-py") (synopsis "Abseil Python common libraries") (description @@ -27285,17 +27392,15 @@ an upload option to send your work back to the platform.") (define-public python-titlecase (package (name "python-titlecase") - (version "0.12.0") + (version "2.4") (source (origin (method url-fetch) (uri (pypi-uri "titlecase" version)) (sha256 (base32 - "0486i99wf8ssa7sgn81fn6fv6i4rhhq6n751bc740b3hzfbpmpl4")))) + "00h92jdpj108z4sb6dpayfblpax20698290jnbyi5z5iwk5974i6")))) (build-system python-build-system) - (native-inputs - (list python-nose)) (home-page "https://github.com/ppannuto/python-titlecase") (synopsis "Capitalize strings similar to book titles") (description @@ -29722,13 +29827,13 @@ and frame grabber interface.") (define-public python-scikit-build (package (name "python-scikit-build") - (version "0.17.1") + (version "0.17.6") (source (origin (method url-fetch) (uri (pypi-uri "scikit_build" version)) (sha256 - (base32 "0v1qcn3nsjxqdl6fa07b7acq6xndqbvvic5dvsgbjgldkjr1drqp")))) + (base32 "17awdvpzj4bn50gk4gmj20r2xcjr5y8lfl2bk582di1pdfim26mm")))) (build-system pyproject-build-system) (arguments (list @@ -29767,11 +29872,7 @@ and frame grabber interface.") ;; nondeterministically (see: ;; https://github.com/scikit-build/scikit-build/issues/711). "and not test_generator_cleanup " - "and not test_generator_selection " - ;; The compiler test fails with a - ;; SKBuildGeneratorNotFoundError error (see: - ;; https://github.com/scikit-build/scikit-build/issues/945). - "and not test_cxx_compiler ")))))))) + "and not test_generator_selection ")))))))) (native-inputs (list cmake-minimal gfortran @@ -29791,7 +29892,8 @@ and frame grabber interface.") python-pytest-virtualenv python-pytest-xdist python-requests - python-setuptools-scm)) + python-setuptools-scm + python-virtualenv)) (propagated-inputs (list python-distro python-packaging python-tomli python-wheel)) (home-page "https://github.com/scikit-build/scikit-build") |