diff options
Diffstat (limited to 'gnu/packages/sagemath.scm')
| -rw-r--r-- | gnu/packages/sagemath.scm | 179 |
1 files changed, 174 insertions, 5 deletions
diff --git a/gnu/packages/sagemath.scm b/gnu/packages/sagemath.scm index 46b5759273..2752d33d3d 100644 --- a/gnu/packages/sagemath.scm +++ b/gnu/packages/sagemath.scm @@ -26,18 +26,24 @@ #:use-module (guix build-system python) #:use-module (guix download) #:use-module (guix git-download) + #:use-module (guix gexp) #:use-module (guix packages) #:use-module (guix utils) #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) + #:use-module (gnu packages base) #:use-module (gnu packages bdw-gc) #:use-module (gnu packages boost) #:use-module (gnu packages check) #:use-module (gnu packages compression) + #:use-module (gnu packages fontutils) + #:use-module (gnu packages gd) + #:use-module (gnu packages graph) #:use-module (gnu packages image) - #:use-module (gnu packages maths) #:use-module (gnu packages lisp) + #:use-module (gnu packages m4) + #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) #:use-module (gnu packages pkg-config) #:use-module (gnu packages popt) @@ -45,7 +51,6 @@ #:use-module (gnu packages python-build) #:use-module (gnu packages python-xyz)) - (define-public brial (package (name "brial") @@ -285,7 +290,7 @@ libraries GMO, MPFR and MPC.") Polyhedra Library (PPL).") (license license:gpl3+))) -(define-public conway-polynomials +(define conway-polynomials (package (name "conway-polynomials") (version "0.10") @@ -306,7 +311,7 @@ polynomials. The aim of this package is to make them available through a generic Python interface.") (license license:gpl3+))) -(define-public polytopes-db +(define polytopes-db (package (name "polytopes-db") (version "20170220") @@ -328,7 +333,7 @@ to be used by SageMath.") ;; Debian says GPLv2+. (license license:gpl2+))) -(define-public graphs +(define graphs (package (name "graphs") (version "20210214") @@ -351,3 +356,167 @@ to be used by SageMath.") database.") ;; Debian says GPLv2+. (license license:gpl2+))) + +(define-public sage + (package + (name "sage") + (version "10.6.beta6") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sagemath/sage") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0w2v5c4k2khlpglaj9sq1vbs7q03ib3d46pgr6k4n3mclhsy2idk")) + (patches (search-patches "sage-update-eclib.patch" + "sage-update-pari-gp.patch")))) + (build-system pyproject-build-system) + (native-inputs + (list autoconf automake m4 pkg-config ; for ./bootstrap + python-cython-3 + python-cysignals + python-memory-allocator + python-pkgconfig + python-jinja2 + python-setuptools + python-wheel)) + (propagated-inputs + (list ;; required to make the sage script start + python-ipython + python-ipywidgets + python-traitlets + ;; required for the Jupyter notebook + python-jupyter-client + python-notebook)) + (inputs + (list boost + brial + cliquer + conway-polynomials + coreutils + ecl + eclib + edge-addition-planarity-suite + fflas-ffpack + flint + fontconfig + freetype + gap + gd + giac + givaro + glpk + gmp + gmp-ecm + graphs + gsl + ijg-libjpeg + iml + lcalc + libbraiding + libhomfly + linbox + libpng + m4ri + m4rie + maxima-ecl + mpc + mpfi + mpfr + ntl + openblas + pari-gp + polytopes-db + python + python-cypari2 + python-fpylll + python-gmpy2 + python-numpy + python-pplpy + rw + sed + singular + symmetrica)) + (arguments + (list + #:tests? #f ; Tests can be run using "make ptestlong", but it is + ; expected that some of them fail. + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda _ + (let ((ecl #$(this-package-input "ecl")) + (ecm #$(this-package-input "gmp-ecm")) + (maxima #$(this-package-input "maxima-ecl")) + (maxima-version #$(package-version + (this-package-input "maxima-ecl"))) + (singular #$(this-package-input "singular")) + (gap #$(this-package-input "gap")) + (pari-gp #$(this-package-input "pari-gp")) + (python #$(this-package-input "python")) + (coreutils #$(this-package-input "coreutils")) + (sed #$(this-package-input "sed")) + (graphs #$(this-package-input "graphs")) + (polytopes-db #$(this-package-input "polytopes-db"))) + (substitute* (find-files "build/bin") + (("sage-bootstrap-python") "python")) + (substitute* "src/sage/env.py" + (("\"ecl-config\"") + (string-append "\"" ecl "/bin/ecl-config\"")) + (("\"ecm\"") + (string-append "\"" ecm "/bin/ecm\"")) + (("\"maxima\"") + (string-append "\"" maxima "/bin/maxima\"")) + (("\"MAXIMA_FAS\"") + (string-append "\"MAXIMA_FAS\", \"" maxima + "/lib/maxima/" maxima-version + "/binary-ecl/maxima.fas\"")) + (("\"Singular\"") + (string-append "\"" singular "/bin/Singular\"")) + (("var\\('SAGE_GAP_COMMAND', None\\)") + (string-append "var('SAGE_GAP_COMMAND', \"" + gap "/bin/gap\")")) + (("join\\(SAGE_LOCAL, \"lib\", \"gap\"\\)") + (string-append "\"" gap "/lib/gap\"")) + (("join\\(SAGE_LOCAL, \"share\", \"gap\"\\)") + (string-append "\"" gap "/share/gap\"")) + ;; definition of SAGE_VENV, which ends up in kernel.json + (("os.path.abspath\\(sys.prefix\\)") + (string-append "\"" #$output "\"")) + ;; paths of the databases + (("GRAPHS_DATA_DIR\"") + (string-append + "GRAPHS_DATA_DIR\", " + "\"" graphs "/share/graphs\"")) + (("POLYTOPE_DATA_DIR\"") + (string-append + "POLYTOPE_DATA_DIR\", " + "\"" polytopes-db "/share/reflexive_polytopes\""))) + (substitute* "src/sage/interfaces/gp.py" + (("command=f\"gp") + (string-append "command=f\"" pari-gp "/bin/gp"))) + (substitute* "src/bin/sage" + (("exec python3") + (string-append "exec " python "/bin/python3")) + (("mkdir") + (string-append coreutils "/bin/mkdir")) + ((" sed ") + (string-append " " sed "/bin/sed ")))))) + (add-before 'build 'setup + (lambda _ + (setenv "SAGE_NUM_THREADS" + (number->string (parallel-job-count))) + (invoke "./bootstrap") + (chdir "src"))) + (delete 'sanity-check)))) ; does not reflect reality + (home-page "https://www.sagemath.org/") + (synopsis "SageMath computer algebra system") + (description + "SageMath is a mathematics software built on top of many existing +packages such as NumPy, SciPy, Matplotlib, Sympy, Maxima, GAP, FLINT, +R and others. Their combined power may be accessed through a common, +Python-based language or directly via interfaces or wrappers.") + ;; Documentation under cc-by-sa3.0, see COPYING.txt in the distribution. + (license license:gpl3))) |