diff options
Diffstat (limited to 'gnu/packages/serialization.scm')
| -rw-r--r-- | gnu/packages/serialization.scm | 192 |
1 files changed, 81 insertions, 111 deletions
diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm index 5b2f023736..b2775e795f 100644 --- a/gnu/packages/serialization.scm +++ b/gnu/packages/serialization.scm @@ -15,7 +15,7 @@ ;;; Copyright © 2023 Alexey Abramov <levenson@mmer.org> ;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2023 Vinicius Monego <monego@posteo.net> -;;; Copyright © 2023, 2024 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2023, 2024 Maxim Cournoyer <maxim@guixotic.coop> ;;; Copyright © 2023 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2024 Paul A. Patience <paul@apatience.com> ;;; Copyright © 2024 Arun Isaac <arunisaac@systemreboot.net> @@ -114,50 +114,6 @@ Code generation is not required to read or write data files nor to use or implement RPC protocols.") (license license:asl2.0))) -(define-public avro-cpp-1.9-for-irods - (package - (inherit avro-cpp) - (properties `((hidden? . #true))) - (version "1.9.2") - (source (origin - (method url-fetch) - (uri (string-append - "mirror://apache/avro/avro-" version - "/avro-src-" version ".tar.gz")) - (sha256 - (base32 "0i3fpm7r72yw397qc8yw9ybzk2mxjkv0yk5hnn00ylc1wbd0np73")))) - (arguments - `(#:configure-flags - '("-DCMAKE_CXX_COMPILER=clang++" - "-DCMAKE_CXX_FLAGS=-stdlib=libc++" - "-DCMAKE_EXE_LINKER_FLAGS=-lc++abi -lz") - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'chdir - (lambda _ (chdir "lang/c++"))) - (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH - (lambda* (#:key inputs #:allow-other-keys) - (let ((gcc (assoc-ref inputs "gcc"))) - (setenv "CPLUS_INCLUDE_PATH" - (string-join - (cons* (search-input-directory inputs "include/c++/v1") - ;; Hide GCC's C++ headers so that they do not interfere with - ;; the Clang headers. - (delete (string-append gcc "/include/c++") - (string-split (getenv "CPLUS_INCLUDE_PATH") - #\:))) - ":")) - (format #true - "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%" - (getenv "CPLUS_INCLUDE_PATH")))))))) - (inputs - `(("boost" ,boost-for-irods) - ("clang" ,clang-toolchain-6) - ("libcxx+libcxxabi" ,libcxx+libcxxabi-6) - ("libcxxabi" ,libcxxabi-6) - ("snappy" ,snappy-with-clang6) - ("zlib" ,zlib))))) - (define-public cereal (package (name "cereal") @@ -633,31 +589,6 @@ it a convenient format to store user input files.") (base32 "070xg4i52z3yv5b9bw5k95qskw0daivh0njka87mzj0d3zf1qsyy"))))))) -;; Tensorflow does not build with jsoncpp 1.8.x. It is built with commit -;; 4356d9bba191e1e16ce7a92073cbf3e63564e973, which lies between version 1.7.2 -;; and 1.7.3. -(define-public jsoncpp-for-tensorflow - (package (inherit jsoncpp) - (name "jsoncpp") - (version "1.7.3") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/open-source-parsers/jsoncpp") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1180ln8blrb0mwzpcf78k49hlki6di65q77rsvglf83kfcyh4d7z")))) - (build-system cmake-build-system) - (arguments - (list #:tests? #f - #:configure-flags - #~'("-DBUILD_SHARED_LIBS:BOOL=YES" - #$@(if (%current-target-system) - #~("-DJSONCPP_WITH_POST_BUILD_UNITTEST=OFF") - #~())))))) - (define-public json.sh (let ((commit "0d5e5c77365f63809bf6e77ef44a1f34b0e05840") ;no releases (revision "1")) @@ -729,7 +660,7 @@ This package also provides @samp{kdlpp}, a C++20 wrapper around @samp{ckdl}.") (define-public capnproto (package (name "capnproto") - (version "1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (string-append @@ -737,13 +668,13 @@ This package also provides @samp{kdlpp}, a C++20 wrapper around @samp{ckdl}.") version ".tar.gz")) (sha256 (base32 - "03f1862ljdshg7d0rg3j7jzgm3ip55kzd2y91q7p0racax3hxx6i")) + "1vs2zpk4l55hb4lq4kldbwdqcjnwm1jblhcaqxmii9dxrd7f807d")) (patches (search-patches "capnproto-fix-test.patch")))) - (build-system gnu-build-system) + (build-system cmake-build-system) (arguments `(#:phases (modify-phases %standard-phases - (add-before 'check 'use-tmp-for-temporary-files + (add-after 'unpack 'use-tmp-for-temporary-files (lambda _ ;; Use /tmp for temporary files, as the default /var/tmp directory ;; doesn't exist. @@ -826,18 +757,20 @@ includes the following features: (define-public python-ruamel.yaml (package + ;; TODO: Fix package name. (name "python-ruamel.yaml") - (version "0.18.6") + (version "0.18.14") (source (origin (method url-fetch) (uri (pypi-uri "ruamel.yaml" version)) (sha256 (base32 - "06rimidc9nb3i3r90n3a1zwf0qxw24zqykb3wpxwd1p72yifc9wb")))) - (build-system python-build-system) + "1dsj3zcb5p73p2xpimdig45hrcvjgnzyyc37jcaxyr63mrmbf9vj")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #f)) ;no tests in PyPI archive (native-inputs - (list python-pytest)) + (list python-setuptools)) (propagated-inputs (list python-ruamel.yaml.clib)) (home-page "https://sourceforge.net/projects/ruamel-yaml/") @@ -867,6 +800,7 @@ style and key ordering are kept, so you can diff the source.") (define-public python-ruamel.yaml.clib (package + ;; TODO: Fix the name (name "python-ruamel.yaml.clib") (version "0.2.12") (source @@ -884,7 +818,7 @@ style and key ordering are kept, so you can diff the source.") (snippet '(begin (delete-file "_ruamel_yaml.c"))))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments `(#:tests? #f ; This package is split from python-ruamel.yaml and ; depends on modules from it for the test suite. @@ -895,7 +829,7 @@ style and key ordering are kept, so you can diff the source.") (lambda _ (invoke "cython" "_ruamel_yaml.pyx")))))) (native-inputs - (list python-cython)) + (list python-cython python-setuptools)) (home-page "https://sourceforge.net/p/ruamel-yaml-clib/code/ci/default/tree") (synopsis "C version of reader, parser and emitter for ruamel.yaml") (description @@ -912,11 +846,39 @@ style and key ordering are kept, so you can diff the source.") (method url-fetch) (uri (pypi-uri "strictyaml" version)) (sha256 - (base32 "01y4hrakk1psdj6ir5k70apqkjjipvja0c40pbfvahmbzjjm9y12")))) + (base32 "01y4hrakk1psdj6ir5k70apqkjjipvja0c40pbfvahmbzjjm9y12")) + (modules '((guix build utils))) + (snippet + #~(begin + ;; Unbundle ruamel. + (delete-file-recursively "strictyaml/ruamel"))))) (build-system pyproject-build-system) - (propagated-inputs (list python-dateutil python-ruamel.yaml)) - (native-inputs (list python-setuptools python-wheel)) - (home-page "https://pypi.org/project/strictyaml/") + (arguments + (list + ;; XXX: Tests require running Docker and an external test framework, + ;; see: <https://github.com/crdoconnor/strictyaml/blob/1.7.3/key.sh> + #:tests? #f + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'remove-bundled-ruamel + (lambda _ + (substitute* "pyproject.toml" + ((", \"strictyaml.ruamel\"") + "") + (("\"python-dateutil>=2.6.0\"" dateutils) + (string-append dateutils ", \"ruamel.yaml\""))) + (substitute* "strictyaml/parser.py" + (("from strictyaml import ruamel") + "import ruamel.yaml")) + (substitute* (find-files "." "\\.py$") + (("from strictyaml.ruamel") + "from ruamel.yaml"))))))) + (native-inputs + (list python-setuptools)) + (propagated-inputs + (list python-dateutil + python-ruamel.yaml-0.16)) + (home-page "https://hitchdev.com/strictyaml/") (synopsis "Strict, typed YAML parser") (description "StrictYAML is a type-safe YAML parser that parses and validates a restricted subset of the YAML specification.") @@ -934,9 +896,12 @@ validates a restricted subset of the YAML specification.") (base32 "1dmv163cnslyqccrybkxn0c9s1jk1mmafmgxv75iamnz5lk5l8hk")))) (build-system pyproject-build-system) + (arguments + (list + ;; Tests are broken upstrea, see <https://github.com/brianolson/cbor_py/issues/6>. + #:tests? #f)) (native-inputs - (list python-setuptools - python-wheel)) + (list python-setuptools)) (home-page "https://github.com/brianolson/cbor_py") (synopsis "Implementation of the Concise Binary Object Representation") (description @@ -950,7 +915,7 @@ to generate and parse. The two primary functions are @code{cbor.loads} and (define-public flatbuffers (package (name "flatbuffers") - (version "24.12.23") + (version "24.12.23") ; Keep in sync with python-flatbuffers. (source (origin (method git-fetch) (uri (git-reference @@ -978,24 +943,25 @@ C#, C, Go, Java, JavaScript, PHP, and Python. It was originally created for game development and other performance-critical applications.") (license license:asl2.0))) -(define-public flatbuffers-23.1 - ;; needed explicitly by tensorflow-lite 2.13.1 - (package - (inherit flatbuffers) - (version "23.1.21") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/google/flatbuffers") - (commit (string-append "v" version)))) - (file-name (git-file-name "flatbuffers" version)) - (sha256 - (base32 - "1z3a6l8g2y53i5xzraswfs2i0i3kk52zv7nzc2q3fgisbyiri3pz")))) - (arguments - (substitute-keyword-arguments (package-arguments flatbuffers) - ((#:configure-flags flags #~'()) - #~(append #$flags '("-DCMAKE_POSITION_INDEPENDENT_CODE=ON"))))))) +(define-public flatbuffers-23.5 + (hidden-package + (package + (inherit flatbuffers) + ;; needed explicitly by onnxruntime and tensorflow-lite@2.14.0 + (version "23.5.26") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/google/flatbuffers") + (commit (string-append "v" version)))) + (file-name (git-file-name "flatbuffers" version)) + (sha256 + (base32 "0cd12dvkzqdafz46q4302mzgpzbz589zmmiga7bq07f2sqy4vrvv")))) + (arguments + (substitute-keyword-arguments (package-arguments flatbuffers) + ((#:configure-flags flags #~'()) + #~(append #$flags '("-DCMAKE_POSITION_INDEPENDENT_CODE=ON")))))))) (define-public go-github-com-google-flatbuffers (package/inherit flatbuffers @@ -1010,19 +976,23 @@ game development and other performance-critical applications.") (define-public python-flatbuffers (package (name "python-flatbuffers") - (version "23.1.21") + (version (package-version flatbuffers)) (source (origin (method url-fetch) (uri (pypi-uri "flatbuffers" version)) (sha256 - (base32 "11gzc7mhl984248q6abz5rrsph76j0y99mwk24xc90sxpcxr2j59")))) + (base32 "1b1dqa2hgcx2lf3g51amzd0a56vhl2vx061bvmwdpdp9dayb0419")))) (build-system pyproject-build-system) - (native-inputs (list python-setuptools python-wheel)) - (home-page "https://google.github.io/flatbuffers/") + ;; XXX: No tests on Pypi. Even in the upstream repository, it's unclear + ;; if there is a way to run tests for the python library only. + (arguments (list #:tests? #f)) + (native-inputs (list python-setuptools)) + (home-page "https://flatbuffers.dev") (synopsis "FlatBuffers serialization for Python") - (description "This package provides the @code{FlatBuffers} serialization -format for Python.") + (description + "This package provides the @code{FlatBuffers} serialization format for +Python.") (license license:asl2.0))) (define-public python-feather-format |