diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 671 |
1 files changed, 353 insertions, 318 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e685cdf4a5..9770e73f52 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -25,6 +25,7 @@ ;;; Copyright © 2024-2025 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2025 Jonas Freimuth <jonas.freimuth@posteo.de> ;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org> +;;; Copyright © 2025 Rikard Nordgren <hrn@posteo.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -119,6 +120,96 @@ #:use-module (srfi srfi-1) #:use-module (ice-9 match)) +(define-public jags + (package + (name "jags") + (version "4.3.1") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/mcmc-jags/JAGS/" + (version-major version) ".x/Source/" + "JAGS-" version ".tar.gz")) + (sha256 + (base32 + "0aa2w4g5057vn1qjp954s2kwxfmy1h7p5yn56fyi7sz9nmaq69gr")))) + (build-system gnu-build-system) + (arguments + (list #:configure-flags + #~(list "--with-lapack=-lopenblas" + "--with-blas=-lopenblas"))) + (home-page "https://mcmc-jags.sourceforge.net/") + (native-inputs + (list gfortran openblas)) + (synopsis "Gibbs sampler") + (description "JAGS is Just Another Gibbs Sampler. It is a program for +analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) +simulation not wholly unlike BUGS. JAGS was written with three aims in mind: + +@enumerate +@item To have a cross-platform engine for the BUGS language; +@item To be extensible, allowing users to write their own functions, + distributions and samplers; +@item To be a platform for experimentation with ideas in Bayesian modelling. +@end enumerate\n") + (license license:gpl2))) + +(define-public java-jdistlib + (package + (name "java-jdistlib") + (version "0.4.5") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/jdistlib/jdistlib-" + version "-src.jar")) + (sha256 + (base32 + "1pkj8aahw9ydr1isbaqrkd05nvq98ik5jwwhf3yf3rky3z869v11")))) + (build-system ant-build-system) + (arguments + `(#:jar-name "jdistlib.jar" + #:jdk ,icedtea-8 + #:tests? #f ; no dedicated test directory + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-broken-encoding + (lambda _ + (with-fluids ((%default-port-encoding "ISO-8859-1")) + (substitute* "src/jdistlib/Beta.java" + (("Scheff.+-Tukey") "Scheffe-Tukey"))) + #t))))) + (propagated-inputs + (list java-jtransforms)) + (native-inputs + (list java-junit)) + (home-page "https://jdistlib.sourceforge.net/") + (synopsis "Java library of statistical distributions") + (description "JDistlib is the Java Statistical Distribution Library, a +Java package that provides routines for various statistical distributions.") + ;; The files that were translated from R code are under GPLv2+; some files + ;; are under the GPLv3, which is a mistake. The author confirmed in an + ;; email that this whole project should be under GPLv2+. + (license license:gpl2+))) + +(define-public libxls + (package + (name "libxls") + (version "1.6.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/libxls/libxls/releases/download/" + "v" version "/libxls-" version ".tar.gz")) + (sha256 + (base32 "0b327zafbwnfxj75n722z6a6zw195rs5bjmm5wskl9dml1p87yxj")))) + (build-system gnu-build-system) + (home-page "https://github.com/libxls/libxls") + (synopsis "Read binary (.xls) Excel spreadsheet files") + (description + "libxls is a C library to read .xls spreadsheet files in the binary OLE +BIFF8 format as created by Excel 97 and later versions. It cannot write them. + +This package also provides @command{xls2csv} to export Excel files to CSV.") + (license license:bsd-2))) (define-public pspp (package @@ -174,59 +265,107 @@ can be imported from spreadsheets, text files and database sources and it can be output in text, PostScript, PDF or HTML.") (license license:gpl3+))) -(define-public jags +(define-public python-altair (package - (name "jags") - (version "4.3.1") + (name "python-altair") + (version "5.3.0") (source (origin - (method url-fetch) - (uri (string-append "mirror://sourceforge/mcmc-jags/JAGS/" - (version-major version) ".x/Source/" - "JAGS-" version ".tar.gz")) + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/altair-viz/altair") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "0aa2w4g5057vn1qjp954s2kwxfmy1h7p5yn56fyi7sz9nmaq69gr")))) - (build-system gnu-build-system) + "1lx3pkphi36pljns6jjxhyn9fbrana8f1y6gcg4yca48nvwlfssl")))) + (build-system pyproject-build-system) (arguments - (list #:configure-flags - #~(list "--with-lapack=-lopenblas" - "--with-blas=-lopenblas"))) - (home-page "https://mcmc-jags.sourceforge.net/") - (native-inputs - (list gfortran openblas)) - (synopsis "Gibbs sampler") - (description "JAGS is Just Another Gibbs Sampler. It is a program for -analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) -simulation not wholly unlike BUGS. JAGS was written with three aims in mind: - -@enumerate -@item To have a cross-platform engine for the BUGS language; -@item To be extensible, allowing users to write their own functions, - distributions and samplers; -@item To be a platform for experimentation with ideas in Bayesian modelling. -@end enumerate\n") - (license license:gpl2))) + (list #:test-flags + ;; XXX: This test file requires hard to package python-anywidgets. + #~(list "--ignore=tests/test_jupyter_chart.py" + "-k" (string-join + (list + ;; these tests open an external connection. + "not test_from_and_to_json_roundtrip" + "test_render_examples_to_chart" + ;; introduces a circular dependency on altair-viewer. + "not test_save_html" + ;; these tests require the vl-convert vega compiler + "test_vegalite_compiler" + "test_to_dict_with_format_vega" + "test_to_json_with_format_vega" + "test_to_url" + "test_renderer_with_none_embed_options" + "test_jupyter_renderer_mimetype") + " and not ")))) + (propagated-inputs (list python-jinja2 + python-jsonschema + python-numpy + python-pandas + python-setuptools + python-toolz + python-typing-extensions)) + (native-inputs (list python-black + python-hatchling + python-ipython + python-pytest + python-vega-datasets)) + (home-page "https://altair-viz.github.io/") + (synopsis "Declarative statistical visualization library for Python") + (description + "Vega-Altair is a declarative statistical visualization library for Python.") + (license license:expat))) -(define-public libxls +(define-public python-arviz (package - (name "libxls") - (version "1.6.3") - (source - (origin - (method url-fetch) - (uri (string-append "https://github.com/libxls/libxls/releases/download/" - "v" version "/libxls-" version ".tar.gz")) - (sha256 - (base32 "0b327zafbwnfxj75n722z6a6zw195rs5bjmm5wskl9dml1p87yxj")))) - (build-system gnu-build-system) - (home-page "https://github.com/libxls/libxls") - (synopsis "Read binary (.xls) Excel spreadsheet files") + (name "python-arviz") + (version "0.21.0") + (source (origin + (method git-fetch) ; PyPI misses some test files + (uri (git-reference + (url "https://github.com/arviz-devs/arviz") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "02bqpl61gzn65vhwspi6gx9ln2wlwh8xm418i8vhmls44rvszcxf")))) + (build-system pyproject-build-system) + (arguments + ;; FIXME: matplotlib tests fail because of the "--save" test flag. + (list #:test-flags #~'("--ignore" + "arviz/tests/base_tests/test_plots_matplotlib.py") + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'remove-radon + (lambda _ + (delete-file + ;; This dataset is loaded remotely, it's not supposed to + ;; be copied locally. + "arviz/data/example_data/code/radon/radon.json"))) + (add-before 'check 'write-permission + (lambda _ + ;; 3 tests require write permission. + (setenv "HOME" "/tmp")))))) + (native-inputs (list python-cloudpickle python-pytest)) + (propagated-inputs (list python-dm-tree + python-h5netcdf + python-matplotlib + python-numpy + python-packaging + python-pandas + python-scipy + python-typing-extensions + python-xarray + python-xarray-einstats + python-setuptools + python-wheel)) + (home-page "https://github.com/arviz-devs/arviz") + (synopsis "Exploratory analysis of Bayesian models") (description - "libxls is a C library to read .xls spreadsheet files in the binary OLE -BIFF8 format as created by Excel 97 and later versions. It cannot write them. - -This package also provides @command{xls2csv} to export Excel files to CSV.") - (license license:bsd-2))) + "ArviZ is a Python package for exploratory analysis of Bayesian models. +It includes functions for posterior analysis, data storage, model checking, +comparison and diagnostics.") + (license license:asl2.0))) ;; Update this package together with the set of recommended packages: r-boot, ;; r-class, r-cluster, r-codetools, r-foreign, r-kernsmooth, r-lattice, @@ -468,6 +607,42 @@ publication-quality data plots. A large amount of 3rd-party packages are available, greatly increasing its breadth and scope.") (license license:gpl3+))) +(define-public python-chaospy + (package + (name "python-chaospy") + (version "4.3.13") + (source (origin ;; PyPI misses Pytest fixtures. + (method git-fetch) + (uri (git-reference + (url "https://github.com/jonathf/chaospy") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1bn4jmwygs5h0dskbniivj20qblgm75pyi9hcjf47r25kawd730m")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + ;; The deprecation warnings break the tests. + (add-after 'unpack 'dont-treat-deprecation-warnings-as-error + (lambda _ + (substitute* "pyproject.toml" + (("\"error::DeprecationWarning\",") ""))))))) + (propagated-inputs (list python-importlib-metadata python-numpoly + python-numpy python-scipy)) + (native-inputs (list python-pytest python-scikit-learn python-setuptools + python-wheel)) + (home-page "https://chaospy.readthedocs.io/en/master/") + (synopsis "Numerical tool for performing uncertainty quantification") + (description "Chaospy is a numerical toolbox for performing uncertainty +quantification using polynomial chaos expansions, advanced Monte Carlo +methods implemented in Python. It also include a full suite of tools for +doing low-discrepancy sampling, quadrature creation, polynomial manipulations, +and a lot more.") + (license license:expat))) + (define-public python-dcor (package (name "python-dcor") @@ -835,55 +1010,29 @@ Keizer et al. (2013) <doi:10.1038/psp.2013.24>, and Jonsson et al. and Vega-Lite examples.") (license license:expat))) -(define-public python-altair +(define-public python-emcee (package - (name "python-altair") - (version "5.3.0") - (source (origin - (method git-fetch) ; no tests in PyPI - (uri (git-reference - (url "https://github.com/altair-viz/altair") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1lx3pkphi36pljns6jjxhyn9fbrana8f1y6gcg4yca48nvwlfssl")))) + (name "python-emcee") + (version "3.1.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "emcee" version)) + (sha256 + (base32 "0zb3ihja3hyj6zjbhkpxhyyppnv58q2jjg0yd1lwmydqdaplvbqi")))) (build-system pyproject-build-system) - (arguments - (list #:test-flags - ;; XXX: This test file requires hard to package python-anywidgets. - #~(list "--ignore=tests/test_jupyter_chart.py" - "-k" (string-join - (list - ;; these tests open an external connection. - "not test_from_and_to_json_roundtrip" - "test_render_examples_to_chart" - ;; introduces a circular dependency on altair-viewer. - "not test_save_html" - ;; these tests require the vl-convert vega compiler - "test_vegalite_compiler" - "test_to_dict_with_format_vega" - "test_to_json_with_format_vega" - "test_to_url" - "test_renderer_with_none_embed_options" - "test_jupyter_renderer_mimetype") - " and not ")))) - (propagated-inputs (list python-jinja2 - python-jsonschema - python-numpy - python-pandas - python-setuptools - python-toolz - python-typing-extensions)) - (native-inputs (list python-black - python-hatchling - python-ipython + (propagated-inputs (list python-numpy)) + (native-inputs (list python-coverage python-pytest - python-vega-datasets)) - (home-page "https://altair-viz.github.io/") - (synopsis "Declarative statistical visualization library for Python") + python-pytest-cov + python-setuptools + python-setuptools-scm + python-wheel)) + (home-page "https://emcee.readthedocs.io/en/stable/") + (synopsis "Ensemble sampling toolkit for MCMC") (description - "Vega-Altair is a declarative statistical visualization library for Python.") + "@code{emcee} is a Python implementation of the affine-invariant ensemble +sampler for Markov chain Monte Carlo (MCMC).") (license license:expat))) (define-public python-george @@ -1044,57 +1193,6 @@ is widely used in many areas of astrophysical research.") algorithms for evaluating Bayesian evidence.") (license license:expat))) -(define-public python-arviz - (package - (name "python-arviz") - (version "0.21.0") - (source (origin - (method git-fetch) ; PyPI misses some test files - (uri (git-reference - (url "https://github.com/arviz-devs/arviz") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "02bqpl61gzn65vhwspi6gx9ln2wlwh8xm418i8vhmls44rvszcxf")))) - (build-system pyproject-build-system) - (arguments - ;; FIXME: matplotlib tests fail because of the "--save" test flag. - (list #:test-flags #~'("--ignore" - "arviz/tests/base_tests/test_plots_matplotlib.py") - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'remove-radon - (lambda _ - (delete-file - ;; This dataset is loaded remotely, it's not supposed to - ;; be copied locally. - "arviz/data/example_data/code/radon/radon.json"))) - (add-before 'check 'write-permission - (lambda _ - ;; 3 tests require write permission. - (setenv "HOME" "/tmp")))))) - (native-inputs (list python-cloudpickle python-pytest)) - (propagated-inputs (list python-dm-tree - python-h5netcdf - python-matplotlib - python-numpy - python-packaging - python-pandas - python-scipy - python-typing-extensions - python-xarray - python-xarray-einstats - python-setuptools - python-wheel)) - (home-page "https://github.com/arviz-devs/arviz") - (synopsis "Exploratory analysis of Bayesian models") - (description - "ArviZ is a Python package for exploratory analysis of Bayesian models. -It includes functions for posterior analysis, data storage, model checking, -comparison and diagnostics.") - (license license:asl2.0))) - (define-public python-pymc (package (name "python-pymc") @@ -1141,42 +1239,6 @@ modeling focusing on advanced Markov chain Monte Carlo (MCMC) and variational inference (VI) algorithms.") (license license:asl2.0))) -(define-public python-chaospy - (package - (name "python-chaospy") - (version "4.3.13") - (source (origin ;; PyPI misses Pytest fixtures. - (method git-fetch) - (uri (git-reference - (url "https://github.com/jonathf/chaospy") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1bn4jmwygs5h0dskbniivj20qblgm75pyi9hcjf47r25kawd730m")))) - (build-system pyproject-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - ;; The deprecation warnings break the tests. - (add-after 'unpack 'dont-treat-deprecation-warnings-as-error - (lambda _ - (substitute* "pyproject.toml" - (("\"error::DeprecationWarning\",") ""))))))) - (propagated-inputs (list python-importlib-metadata python-numpoly - python-numpy python-scipy)) - (native-inputs (list python-pytest python-scikit-learn python-setuptools - python-wheel)) - (home-page "https://chaospy.readthedocs.io/en/master/") - (synopsis "Numerical tool for performing uncertainty quantification") - (description "Chaospy is a numerical toolbox for performing uncertainty -quantification using polynomial chaos expansions, advanced Monte Carlo -methods implemented in Python. It also include a full suite of tools for -doing low-discrepancy sampling, quadrature creation, polynomial manipulations, -and a lot more.") - (license license:expat))) - (define-public python-patsy (package (name "python-patsy") @@ -1301,31 +1363,6 @@ uncertainties and are backed by strong theoretical guarantees thanks to conformal prediction methods intervals.") (license license:bsd-3))) -(define-public python-emcee - (package - (name "python-emcee") - (version "3.1.6") - (source - (origin - (method url-fetch) - (uri (pypi-uri "emcee" version)) - (sha256 - (base32 "0zb3ihja3hyj6zjbhkpxhyyppnv58q2jjg0yd1lwmydqdaplvbqi")))) - (build-system pyproject-build-system) - (propagated-inputs (list python-numpy)) - (native-inputs (list python-coverage - python-pytest - python-pytest-cov - python-setuptools - python-setuptools-scm - python-wheel)) - (home-page "https://emcee.readthedocs.io/en/stable/") - (synopsis "Ensemble sampling toolkit for MCMC") - (description - "@code{emcee} is a Python implementation of the affine-invariant ensemble -sampler for Markov chain Monte Carlo (MCMC).") - (license license:expat))) - (define-public python-statsmodels (package (name "python-statsmodels") @@ -3095,43 +3132,6 @@ editing and rich syntax highlight. One would consider Radian as a IPython clone for R, though its design is more aligned to Julia.") (license license:expat))) -(define-public java-jdistlib - (package - (name "java-jdistlib") - (version "0.4.5") - (source (origin - (method url-fetch) - (uri (string-append "mirror://sourceforge/jdistlib/jdistlib-" - version "-src.jar")) - (sha256 - (base32 - "1pkj8aahw9ydr1isbaqrkd05nvq98ik5jwwhf3yf3rky3z869v11")))) - (build-system ant-build-system) - (arguments - `(#:jar-name "jdistlib.jar" - #:jdk ,icedtea-8 - #:tests? #f ; no dedicated test directory - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-broken-encoding - (lambda _ - (with-fluids ((%default-port-encoding "ISO-8859-1")) - (substitute* "src/jdistlib/Beta.java" - (("Scheff.+-Tukey") "Scheffe-Tukey"))) - #t))))) - (propagated-inputs - (list java-jtransforms)) - (native-inputs - (list java-junit)) - (home-page "https://jdistlib.sourceforge.net/") - (synopsis "Java library of statistical distributions") - (description "JDistlib is the Java Statistical Distribution Library, a -Java package that provides routines for various statistical distributions.") - ;; The files that were translated from R code are under GPLv2+; some files - ;; are under the GPLv3, which is a mistake. The author confirmed in an - ;; email that this whole project should be under GPLv2+. - (license license:gpl2+))) - (define-public emacs-ess (package (name "emacs-ess") @@ -3276,32 +3276,6 @@ statistical analysis programs such as R, Julia, and JAGS.") files, including Rmarkdown files.") (license license:gpl3+))) -(define-public readstat - (let ((commit "718d49155e327471ed9bf4a8c157f849f285b46c") - (revision "0")) - (package - (name "readstat") - (version (git-version "1.1.9" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/WizardMac/ReadStat") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "121axcx4shd0fqlcr1mk7y841sd59r9mx473c4av8gs81xfhcg0h")))) - (build-system gnu-build-system) - (native-inputs - (list autoconf automake gettext-minimal libtool)) - (inputs - (list zlib)) - (home-page "https://github.com/WizardMac/ReadStat") - (synopsis "Convert SAS, Stata, and SPSS files") - (description "Command-line tool and C library for reading files from -popular stats packages like SAS, Stata and SPSS.") - (license license:expat)))) - (define-public python-pyreadstat (package (name "python-pyreadstat") @@ -3346,59 +3320,6 @@ files into/from Pandas DataFrames. It is a wrapper around the C library @code{readstat}.") (license license:asl2.0))) -(define-public xlispstat - (let ((commit "f1bea6053df658ee48612bf1f63c35de99e2c649") - (revision "0")) - (package - (name "xlispstat") - (version (git-version "3.52.23" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/jhbadger/xlispstat.git") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1p0cmgy19kbkxia139cb5w9dnkp2cdqp5n3baag6cq3prn3n71mf")))) - (build-system gnu-build-system) - (arguments - `(#:parallel-build? #f ; Parallel builds are not supported - #:configure-flags (list "--with-gcc") - #:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (with-output-to-file "exit.lsp" - (lambda () (display "(exit)"))) - (invoke "./xlisp" "tests/test" "exit"))))))) - (inputs (list tcsh - libx11 - libxmu - libxext - libxpm - libxaw - ncurses - gnuplot)) - (native-inputs (list pkg-config)) - (synopsis "Statistical analysis environment with interactive graphics") - (description "XLISP-STAT is a statistical environment based on a Lisp -dialect called XLISP. To facilitate statistical computations, standard -functions for addition, logarithms, etc., have been modified to operate on -lists and arrays of numbers, and a number of basic statistical functions have -been added. Many of these functions have been written in Lisp, and additional -functions can be added easily by a user. Several basic forms of plots, -including histograms, scatterplots, rotatable plots and scatterplot matrices -are provided. These plots support various forms of interactive highlighting -operations and can be linked so points highlighted in one plot will be -highlighted in all linked plots. Interactions with the plots are controlled -by the mouse, menus and dialog boxes. An object-oriented programming system -is used to allow menus, dialogs, and the response to mouse actions to be - customized.") - (home-page "https://homepage.divms.uiowa.edu/~luke/xls/xlsinfo/") - (license license:expat)))) - (define-public r-rlrsim (package (name "r-rlrsim") @@ -3537,6 +3458,67 @@ simple slopes, standardized coefficients, regions of significance (Johnson & Neyman, 1936; cf. Spiller et al., 2012), etc.") (license license:gpl3))) +(define-public r-vpc + (package + (name "r-vpc") + (version "1.2.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ronkeizer/vpc") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1bkp0zy1pswrqgcsdvxvc7gyfl544k89qrjqdcj4aqkif0bfqmx8")))) + (build-system r-build-system) + (native-inputs + (list r-testit)) + (propagated-inputs + (list r-classint + r-dplyr + r-ggplot2 + r-mass + r-readr + r-stringr + r-survival + r-tidyr)) + (home-page "https://vpc.ronkeizer.com/") + (synopsis "Create visual predictive checks") + (description + "Visual predictive checks are a commonly used diagnostic plot in +pharmacometrics, showing how certain statistics (percentiles) for observed +data compare to those same statistics for data simulated from a model. The +package can generate VPCs for continuous, categorical, censored, and +(repeated) time-to-event data.") + (license license:expat))) + +(define-public readstat + (let ((commit "718d49155e327471ed9bf4a8c157f849f285b46c") + (revision "0")) + (package + (name "readstat") + (version (git-version "1.1.9" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/WizardMac/ReadStat") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "121axcx4shd0fqlcr1mk7y841sd59r9mx473c4av8gs81xfhcg0h")))) + (build-system gnu-build-system) + (native-inputs + (list autoconf automake gettext-minimal libtool)) + (inputs + (list zlib)) + (home-page "https://github.com/WizardMac/ReadStat") + (synopsis "Convert SAS, Stata, and SPSS files") + (description "Command-line tool and C library for reading files from +popular stats packages like SAS, Stata and SPSS.") + (license license:expat)))) + (define-public ruby-enumerable-statistics (package (name "ruby-enumerable-statistics") @@ -3634,3 +3616,56 @@ statistical summary in arrays and enumerables.") can be used for learning (Structure and Parameter), inference (Probabilistic and Causal), and simulations in Bayesian Networks.") (license license:expat))) + +(define-public xlispstat + (let ((commit "f1bea6053df658ee48612bf1f63c35de99e2c649") + (revision "0")) + (package + (name "xlispstat") + (version (git-version "3.52.23" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jhbadger/xlispstat.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1p0cmgy19kbkxia139cb5w9dnkp2cdqp5n3baag6cq3prn3n71mf")))) + (build-system gnu-build-system) + (arguments + `(#:parallel-build? #f ; Parallel builds are not supported + #:configure-flags (list "--with-gcc") + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-output-to-file "exit.lsp" + (lambda () (display "(exit)"))) + (invoke "./xlisp" "tests/test" "exit"))))))) + (inputs (list tcsh + libx11 + libxmu + libxext + libxpm + libxaw + ncurses + gnuplot)) + (native-inputs (list pkg-config)) + (synopsis "Statistical analysis environment with interactive graphics") + (description "XLISP-STAT is a statistical environment based on a Lisp +dialect called XLISP. To facilitate statistical computations, standard +functions for addition, logarithms, etc., have been modified to operate on +lists and arrays of numbers, and a number of basic statistical functions have +been added. Many of these functions have been written in Lisp, and additional +functions can be added easily by a user. Several basic forms of plots, +including histograms, scatterplots, rotatable plots and scatterplot matrices +are provided. These plots support various forms of interactive highlighting +operations and can be linked so points highlighted in one plot will be +highlighted in all linked plots. Interactions with the plots are controlled +by the mouse, menus and dialog boxes. An object-oriented programming system +is used to allow menus, dialogs, and the response to mouse actions to be + customized.") + (home-page "https://homepage.divms.uiowa.edu/~luke/xls/xlsinfo/") + (license license:expat)))) |