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-rw-r--r--gnu/packages/bioinformatics.scm135
-rw-r--r--gnu/packages/cpp.scm23
-rw-r--r--gnu/packages/cran.scm4
-rw-r--r--gnu/packages/databases.scm139
-rw-r--r--gnu/packages/dbm.scm6
-rw-r--r--gnu/packages/diffoscope.scm5
-rw-r--r--gnu/packages/dns.scm8
-rw-r--r--gnu/packages/elixir.scm21
-rw-r--r--gnu/packages/gcc.scm39
-rw-r--r--gnu/packages/gnuzilla.scm6
-rw-r--r--gnu/packages/golang.scm21
-rw-r--r--gnu/packages/guile-xyz.scm29
-rw-r--r--gnu/packages/haskell-apps.scm24
-rw-r--r--gnu/packages/haskell-xyz.scm6
-rw-r--r--gnu/packages/machine-learning.scm251
-rw-r--r--gnu/packages/protobuf.scm11
-rw-r--r--gnu/packages/rpc.scm88
-rw-r--r--gnu/packages/tbb.scm14
18 files changed, 168 insertions, 662 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e14d74b186..8dffc86c00 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -20397,141 +20397,6 @@ includes operations like compartment, insulation or peak calling.")
the HiCExplorer and pyGenomeTracks packages.")
(license license:gpl3+)))
-(define-public python-hicexplorer
- (package
- (name "python-hicexplorer")
- (version "3.7.4")
- (source
- (origin
- ;; The latest version is not available on Pypi.
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/deeptools/HiCExplorer")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1cjr9l0vcngd0f4dmar388ri1ah1bqybnn53jc85xwh07wfacq7l"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- '(list "hicexplorer/test/general/"
- "--ignore" "hicexplorer/test/general/test_hicTADClassifier.py"
- "--ignore" "hicexplorer/test/general/test_hicTrainTADClassifier.py"
- "-k"
- (string-append
- ;; Unknown chromosome: ChrX
- "not test_build_matrix_restrictionCutFile_two"
- ;; fixture 'keepSelfLigation' not found
- " and not test_build_matrix_restrictionCutFile_six"
- ;; ValueError: object dtype is not supported by sparse matrices
- " and not test_hic_transfer_obs_exp_perChromosome"
-
- ;; No KR balancing available
- " and not test_correct_matrix_KR_partial_cool"
- " and not test_correct_matrix_KR_cool"
- " and not test_correct_matrix_KR_H5"))
- #:phases
- #~(modify-phases %standard-phases
- ;; See https://github.com/deeptools/Knight-Ruiz-Matrix-balancing-algorithm/issues/23
- (add-after 'unpack 'remove-dependency-on-krbalancing
- (lambda _
- (substitute* "hicexplorer/hicCorrectMatrix.py"
- (("from krbalancing import.*") "")
- (("( *)assert\\(args.correctionMethod == 'KR'\\)" m indent)
- (string-append m "\n"
- indent "log.error('krbalancing not available')\n"
- indent "exit(1)")))
- (substitute* "setup.py"
- (("\"krbalancing >= 0.0.5\",") ""))
- (substitute* "requirements.txt"
- (("krbalancing >= 0.0.5") ""))))
- (add-after 'unpack 'fix-references
- (lambda _
- (let ((site (string-append #$output "/lib/python"
- #$(version-major+minor
- (package-version python))
- "/site-packages")))
- (substitute* "hicexplorer/lib/tadClassifier.py"
- (("model_location = site.getsitepackages\\(\\)\\[0\\]")
- (string-append "model_location = \"" site "\""))))
- (substitute* "hicexplorer/hicFindRestSite.py"
- (("subprocess.check_output\\(\\[\"cat\"")
- (string-append "subprocess.check_output([\""
- (which "cat") "\""))
- (("cmd = 'sort -k1")
- (string-append "cmd = '" (which "sort") " -k1")))))
- ;; The tests aim to detect available memory and run more tests when
- ;; there is more available memory. Let's run them deterministically
- ;; instead and don't run any tests that require more than 1GB of
- ;; RAM.
- (add-after 'unpack 'run-only-low-mem-tests
- (lambda _
- (with-directory-excursion "hicexplorer/test"
- (substitute* '("trivial_runs/test_hicBuildMatrix_trivial_runs_2.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs_five.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs_four.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs_two_1.py"
- "trivial_runs/test_hicBuildMatrix_trivial_runs.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs_two_3.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs_three.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs_two.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs_two_2.py"
- "trivial_runs/test_hicAggregateContacts_trivial_runs_six.py"
- "general/test_hicDifferentialTAD.py"
- "general/test_hicDetectLoops.py"
- "general/test_hicPlotMatrix.py"
- "general/test_hicHyperoptDetectLoops.py"
- "general/test_hicCreateThresholdFile.py"
- "general/test_hicMergeDomains.py"
- "general/test_hicHyperoptDetectLoopsHiCCUPS.py"
- "general/test_hicAggregateContacts.py"
- "general/test_hicInterIntraTAD.py")
- (("^memory =.*") "memory = 1\n"))))))))
- (propagated-inputs
- (list python-biopython
- python-cleanlab
- python-cooler
- python-fit-nbinom
- python-future
- python-graphviz
- python-hic2cool
- python-hicmatrix
- python-hyperopt
- python-imbalanced-learn
- python-intervaltree
- python-ipykernel
- python-jinja2
- python-matplotlib
- python-numpy
- python-pandas
- python-psutil
- python-pybedtools
- python-pybigwig
- python-pygenometracks
- python-pysam
- python-scikit-learn
- python-scipy
- python-tables
- python-tqdm
- python-unidecode))
- (native-inputs
- (list graphviz)) ;for hicexplorer/test/test_compute_function.py
- (home-page "https://hicexplorer.readthedocs.io")
- (synopsis "Process, analyze and visualize Hi-C data")
- (description
- "HiCExplorer is a powerful and easy to use set of tools to process,
-normalize and visualize Hi-C data. HiCExplorer facilitates the creation of
-contact matrices, correction of contacts, TAD detection, A/B compartments,
-merging, reordering or chromosomes, conversion from different formats
-including cooler and detection of long-range contacts. Moreover, it allows
-the visualization of multiple contact matrices along with other types of data
-like genes, compartments, ChIP-seq coverage tracks (and in general any type of
-genomic scores), long range contacts and the visualization of viewpoints.")
- (license license:gpl3)))
-
(define-public python-pygenometracks
(package
(name "python-pygenometracks")
diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm
index 2f5b5b71b2..aac96f96a7 100644
--- a/gnu/packages/cpp.scm
+++ b/gnu/packages/cpp.scm
@@ -2096,29 +2096,6 @@ augment the C++ standard library. The Abseil library code is collected from
Google's C++ code base.")
(license license:asl2.0)))
-;; This is for grpc-for-python-grpcio; keep this in sync with its actual
-;; requirements.
-(define-public abseil-cpp-20211102.0
- (let ((base abseil-cpp-20200923.3))
- (package
- (inherit base)
- (name "abseil-cpp")
- (version "20211102.0")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/abseil/abseil-cpp")
- (commit "215105818dfde3174fe799600bb0f3cae233d0bf")))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "028vlxpmh65kb7s0cpba38qcwk1abyn5br0ffhvvjjh97vld69di"))))
- (arguments
- (substitute-keyword-arguments (package-arguments base)
- ((#:tests? _ #false) #false)
- ((#:configure-flags flags)
- #~(cons* "-DCMAKE_CXX_STANDARD=11" #$flags)))))))
-
(define-public abseil-cpp-20220623
(let ((base abseil-cpp-20200923.3))
(package
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 48adf3aaac..64b7d820b4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -37779,14 +37779,14 @@ colored by the number of neighboring points. This is useful to visualize the
(define-public r-arrow
(package
(name "r-arrow")
- (version "20.0.0.2")
+ (version "21.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "arrow" version))
(sha256
(base32
- "19xnz3df1r9n01dbsf05xkw6q5w8vipzkkb5bpx7jlcp38jnp8zn"))))
+ "1ipwcgzbzr5xb1ff0ikwxdfhbniqdjmvi4505cmb0divg9p50946"))))
(properties
`((upstream-name . "arrow")
(updater-ignored-native-inputs . ("r-duckdb"))
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index f8b14e834c..f262aaf95b 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -1310,17 +1310,16 @@ as a drop-in replacement of MySQL.")
(define-public mariadb-connector-c
(package
(name "mariadb-connector-c")
- (version "3.1.13")
+ (version "3.4.5")
(source
(origin
(method url-fetch)
(uri (string-append
- "https://downloads.mariadb.org/f/connector-c-" version
- "/mariadb-connector-c-" version "-src.tar.gz"
- "/from/https%3A//mirrors.ukfast.co.uk/sites/mariadb/?serve"))
+ "https://downloads.mariadb.org/rest-api/connector-c/"
+ version "/mariadb-connector-c-" version "-src.tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
- (base32 "0xb8fiissblxb319y5ifqqp86zblwis789ipb753pcb4zpnsaw82"))))
+ (base32 "18y1x985pnvvirmwfka81ygsvl7isc52mj9c9hvc69fb2qw1jzmi"))))
(inputs
(list openssl))
(build-system cmake-build-system)
@@ -5165,7 +5164,7 @@ with integrated support for finding required rows quickly.")
(define-public apache-arrow
(package
(name "apache-arrow")
- (version "20.0.0")
+ (version "21.0.0")
(source
(origin
(method git-fetch)
@@ -5175,7 +5174,7 @@ with integrated support for finding required rows quickly.")
(file-name (git-file-name name version))
(sha256
(base32
- "1n96m8fbpg8azbwm6hx3adbc2sa070k1zh0lj18yqlw2nqmdslr4"))))
+ "0lxywrjfwhiznsldpv5bd6g357za5ng64jvy943kp0ndckh5l4g9"))))
(build-system cmake-build-system)
(arguments
(list
@@ -5419,132 +5418,6 @@ language-bindings for structure manipulation. It also provides IPC and common
algorithm implementations.")
(license license:asl2.0)))
-(define-public apache-arrow-0.16
- (package
- (name "apache-arrow")
- (version "0.16.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow")
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "15bplqy5708bxy1mynzjkd3d2g8v2wd36z8l0ap8yyyq54l3gdvy"))))
- (build-system cmake-build-system)
- (arguments
- `(#:tests? #f
- #:phases
- (modify-phases %standard-phases
- (add-before 'configure 'enter-source-directory
- (lambda _
- (chdir "cpp")
- (substitute* "src/parquet/CMakeLists.txt"
- ((" parquet_constants.cpp") "")
- (("set\\(THRIFT_OUTPUT_FILES \\$\\{THRIFT_OUTPUT_FILES\\}.*") "")
- ((".*\"\\$\\{THRIFT_OUTPUT_DIR\\}/parquet_constants.cpp\"\\).*") ""))))
- (add-after 'unpack 'set-env
- (lambda _
- (setenv "BOOST_ROOT" (assoc-ref %build-inputs "boost"))
- (setenv "BROTLI_HOME" (assoc-ref %build-inputs "brotli"))
- (setenv "FLATBUFFERS_HOME" (assoc-ref %build-inputs "flatbuffers"))
- (setenv "RAPIDJSON_HOME" (assoc-ref %build-inputs "rapidjson")))))
- #:build-type "Release"
- #:configure-flags
- (list "-DARROW_PYTHON=ON"
- "-DARROW_GLOG=ON"
- "-DARROW_SSE42=OFF"
- "-DARROW_BOOST_USE_SHARED=ON"
- ;; Parquet options
- "-DARROW_PARQUET=ON"
-
- ;; The maintainers disallow using system versions of
- ;; jemalloc:
- ;; https://issues.apache.org/jira/browse/ARROW-3507. This
- ;; is unfortunate because jemalloc increases performance:
- ;; https://arrow.apache.org/blog/2018/07/20/jemalloc/.
- "-DARROW_JEMALLOC=OFF"
-
- ;; The CMake option ARROW_DEPENDENCY_SOURCE is a global
- ;; option that instructs the build system how to resolve
- ;; each dependency. SYSTEM = Finding the dependency in
- ;; system paths using CMake's built-in find_package
- ;; function, or using pkg-config for packages that do not
- ;; have this feature
- "-DARROW_DEPENDENCY_SOURCE=SYSTEM"
-
- ;; Split output into its component packages.
- (string-append "-DCMAKE_INSTALL_PREFIX="
- (assoc-ref %outputs "out"))
- (string-append "-DCMAKE_INSTALL_RPATH="
- (assoc-ref %outputs "out")
- "/lib")
- (string-append "-DCMAKE_INSTALL_BINDIR="
- (assoc-ref %outputs "out")
- "/bin")
- (string-append "-DCMAKE_INSTALL_INCLUDEDIR="
- (assoc-ref %outputs "include")
- "/share/include")
-
-
- "-DARROW_WITH_SNAPPY=ON"
- "-DARROW_WITH_ZLIB=ON"
- "-DARROW_WITH_ZSTD=ON"
- "-DARROW_WITH_LZ4=ON"
- "-DARROW_COMPUTE=ON"
- "-DARROW_CSV=ON"
- "-DARROW_DATASET=ON"
- "-DARROW_FILESYSTEM=ON"
- "-DARROW_HDFS=ON"
- "-DARROW_JSON=ON"
- ;; Arrow Python C++ integration library (required for
- ;; building pyarrow). This library must be built against
- ;; the same Python version for which you are building
- ;; pyarrow. NumPy must also be installed. Enabling this
- ;; option also enables ARROW_COMPUTE, ARROW_CSV,
- ;; ARROW_DATASET, ARROW_FILESYSTEM, ARROW_HDFS, and
- ;; ARROW_JSON.
- "-DARROW_PYTHON=ON"
-
- ;; Building the tests forces on all the
- ;; optional features and the use of static
- ;; libraries.
- "-DARROW_BUILD_TESTS=OFF"
- "-DBENCHMARK_ENABLE_GTEST_TESTS=OFF"
- ;;"-DBENCHMARK_ENABLE_TESTING=OFF"
- "-DARROW_BUILD_STATIC=OFF")))
- (inputs
- `(("boost" ,boost)
- ("brotli" ,brotli)
- ("double-conversion" ,double-conversion)
- ("snappy" ,snappy)
- ("gflags" ,gflags)
- ("glog" ,glog)
- ("apache-thrift" ,apache-thrift "lib")
- ("protobuf" ,protobuf)
- ("rapidjson" ,rapidjson)
- ("zlib" ,zlib)
- ("bzip2" ,bzip2)
- ("lz4" ,lz4)
- ("zstd" ,zstd "lib")
- ("re2" ,re2)
- ("grpc" ,grpc)
- ("python-3" ,python)
- ("python-numpy" ,python-numpy)))
- (native-inputs
- (list pkg-config apache-thrift))
- (outputs '("out" "include"))
- (home-page "https://arrow.apache.org/")
- (synopsis "Columnar in-memory analytics")
- (description "Apache Arrow is a columnar in-memory analytics layer
-designed to accelerate big data. It houses a set of canonical in-memory
-representations of flat and hierarchical data along with multiple
-language-bindings for structure manipulation. It also provides IPC and common
-algorithm implementations.")
- (license license:asl2.0)))
-
(define-public python-pyarrow
(package
(inherit apache-arrow)
diff --git a/gnu/packages/dbm.scm b/gnu/packages/dbm.scm
index da5db84b41..97b2bded46 100644
--- a/gnu/packages/dbm.scm
+++ b/gnu/packages/dbm.scm
@@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012, 2013, 2014, 2016, 2020 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2015, 2025 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2016, 2017, 2018, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016-2018, 2020, 2021, 2025 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017, 2018 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2018 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
@@ -91,7 +91,9 @@
#:out-of-source? #true
#:configure-flags
#~(list
- "CFLAGS=-g -O2 -Wno-error=implicit-function-declaration"
+ #$@(if (target-ppc64le?)
+ #~("CFLAGS=-g -O2 -Wno-error=implicit-function-declaration -fpermissive")
+ #~("CFLAGS=-g -O2 -Wno-error=implicit-function-declaration"))
;; Remove 7 MiB of .a files.
"--disable-static"
diff --git a/gnu/packages/diffoscope.scm b/gnu/packages/diffoscope.scm
index 4d1121f476..a5b371a099 100644
--- a/gnu/packages/diffoscope.scm
+++ b/gnu/packages/diffoscope.scm
@@ -78,7 +78,7 @@
(define-public diffoscope
(package
(name "diffoscope")
- (version "302")
+ (version "303")
(source
(origin
(method git-fetch)
@@ -87,7 +87,7 @@
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "1h7qkmy8q2l864f4vlpxclxljh7dqr51pwvwra5lfr92bjcy5mdr"))))
+ (base32 "1asrhbba9jrk7vibr89s03sy0kac0bhh9ddp0gy45zffhhflnxb5"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -210,6 +210,7 @@
html2text
imagemagick
libarchive
+ libcaca
llvm
lz4
lzip
diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm
index 7cb86ad144..5e981ac02c 100644
--- a/gnu/packages/dns.scm
+++ b/gnu/packages/dns.scm
@@ -851,7 +851,7 @@ Extensions} (DNSSEC).")
(define-public knot
(package
(name "knot")
- (version "3.4.6")
+ (version "3.4.8")
(source
(origin
(method git-fetch)
@@ -860,7 +860,7 @@ Extensions} (DNSSEC).")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0chdlzasng3q3ss4yfppf8fbkkiqllqz4p6s8a6jgwhcbiylmmdi"))
+ (base32 "0zydnb9kbk65kbrg01sxl48a5ikdap7lhm1wvmcmk5vhvgxdbb53"))
(patches
(search-patches "knot-remove-runtime-deps.patch"))
(modules '((guix build utils)))
@@ -993,14 +993,14 @@ synthesis, and on-the-fly re-configuration.")
(define-public knot-resolver
(package
(name "knot-resolver")
- (version "5.7.5")
+ (version "5.7.6")
(source (origin
(method url-fetch)
(uri (string-append "https://secure.nic.cz/files/knot-resolver/"
"knot-resolver-" version ".tar.xz"))
(sha256
(base32
- "0rnz7k5pjqd4ds46iyf6r7xwrci0apm2sr6lpaf9sncjmbwrq8w0"))))
+ "0x6n0h2vd7756rgyzmzhsvky5j7p4brsynnwp13ya003aqxcs32h"))))
(build-system meson-build-system)
(outputs '("out" "doc"))
(arguments
diff --git a/gnu/packages/elixir.scm b/gnu/packages/elixir.scm
index 96ba0421ea..0e53223f10 100644
--- a/gnu/packages/elixir.scm
+++ b/gnu/packages/elixir.scm
@@ -8,7 +8,7 @@
;;; Copyright © 2021 Oskar Köök <oskar@maatriks.ee>
;;; Copyright © 2021 Cees de Groot <cg@evrl.com>
;;; Copyright © 2024 Andrew Tropin <andrew@trop.in>
-;;; Copyright © 2024 Ivan Sokolov <ivan-p-sokolov@ya.ru>
+;;; Copyright © 2024, 2025 Ivan Sokolov <ivan-p-sokolov@ya.ru>
;;; Copyright © 2024, 2025 Igor Goryachev <igor@goryachev.org>
;;;
;;; This file is part of GNU Guix.
@@ -200,23 +200,24 @@ being successfully used in web development and the embedded software domain.")
(delete 'bootstrap)
(delete 'configure)
(replace 'build
- (lambda* (#:key inputs #:allow-other-keys)
+ (lambda _
(setenv "MIX_ENV" "prod")
(invoke "mix" "compile")))
(replace 'install
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (define X.Y #$(version-major+minor (package-version elixir)))
- (define out (string-append (assoc-ref outputs "out")
- "/lib/elixir/" X.Y "/hex"))
- (mkdir-p out)
- (let* ((prod-dir "_build/prod/lib/hex")
+ (lambda _
+ (let* ((X.Y #$(version-major+minor
+ (package-version
+ (lookup-package-input this-package "elixir"))))
+ (out (string-append #$output "/lib/elixir/" X.Y "/hex"))
+ (prod-dir "_build/prod/lib/hex")
(prod-dir-mix (string-append prod-dir "/.mix")))
(and (directory-exists? prod-dir-mix)
(delete-file-recursively prod-dir-mix))
- (copy-recursively "_build/prod/lib/hex" out)))))))
+ (mkdir-p out)
+ (copy-recursively prod-dir out)))))))
(synopsis "Package manager for the Erlang VM")
(description
"This project provides tasks that integrate with Mix, Elixir's build
tool.")
- (home-page "https://hexdocs.pm/makeup_elixir/")
+ (home-page "https://hexdocs.pm/hex/api-reference.html")
(license license:bsd-2)))
diff --git a/gnu/packages/gcc.scm b/gnu/packages/gcc.scm
index e0231f88fe..aa1454ca96 100644
--- a/gnu/packages/gcc.scm
+++ b/gnu/packages/gcc.scm
@@ -675,11 +675,32 @@ Go. It also includes runtime support libraries for these languages.")
(define %gcc-13-x86_64-micro-architectures
(append %gcc-12-x86_64-micro-architectures
- '("graniterapids"))) ;Intel
+ '("graniterapids" ;Intel
+ "lujiazui")))
+
+(define %gcc-14-aarch64-micro-architectures
+ (append %gcc-13-aarch64-micro-architectures
+ '("armv9.4-a")))
+
+(define %gcc-14-ppc64le-micro-architectures
+ (append %gcc-10-ppc64le-micro-architectures
+ '("power11")))
(define %gcc-14-x86_64-micro-architectures
(append %gcc-13-x86_64-micro-architectures
- '("znver5"))) ;AMD
+ '("znver5" ;AMD
+ "yongfeng")))
+
+(define %gcc-15-aarch64-micro-architectures
+ (append %gcc-14-aarch64-micro-architectures
+ '("armv9.5-a")))
+
+(define %gcc-15-x86_64-micro-architectures
+ (append
+ (fold delete %gcc-14-x86_64-micro-architectures
+ '("knm" "knl"))
+ '("diamondrapids" ;Intel
+ "shijidadao")))
(define-public gcc-7
(package
@@ -887,10 +908,10 @@ It also includes runtime support libraries for these languages.")
(("\\.\\./lib64") "../lib"))))))))
(properties
`((compiler-cpu-architectures
- ("aarch64" ,@%gcc-13-aarch64-micro-architectures)
+ ("aarch64" ,@%gcc-14-aarch64-micro-architectures)
("armhf" ,@%gcc-13-armhf-micro-architectures)
- ("i686" ,@%gcc-13-x86_64-micro-architectures)
- ("powerpc64le" ,@%gcc-10-ppc64le-micro-architectures)
+ ("i686" ,@%gcc-14-x86_64-micro-architectures)
+ ("powerpc64le" ,@%gcc-14-ppc64le-micro-architectures)
("x86_64" ,@%gcc-14-x86_64-micro-architectures))
,@(package-properties gcc-11)))))
@@ -932,11 +953,11 @@ It also includes runtime support libraries for these languages.")
(string-append lib "/include"))))))))))))
(properties
`((compiler-cpu-architectures
- ("aarch64" ,@%gcc-13-aarch64-micro-architectures)
+ ("aarch64" ,@%gcc-15-aarch64-micro-architectures)
("armhf" ,@%gcc-13-armhf-micro-architectures)
- ("i686" ,@%gcc-13-x86_64-micro-architectures)
- ("powerpc64le" ,@%gcc-10-ppc64le-micro-architectures)
- ("x86_64" ,@%gcc-14-x86_64-micro-architectures))
+ ("i686" ,@%gcc-15-x86_64-micro-architectures)
+ ("powerpc64le" ,@%gcc-14-ppc64le-micro-architectures)
+ ("x86_64" ,@%gcc-15-x86_64-micro-architectures))
,@(package-properties gcc-11)))))
diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm
index 7e5ebef0e9..13de000920 100644
--- a/gnu/packages/gnuzilla.scm
+++ b/gnu/packages/gnuzilla.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2013-2022 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014-2025 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
-;;; Copyright © 2016-2019, 2021, 2024 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016-2019, 2021, 2024, 2025 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Alex Griffin <a@ajgrf.com>
;;; Copyright © 2017, 2023 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2017, 2018 Nikita <nikita@n0.is>
@@ -931,8 +931,8 @@ variable defined below. It requires guile-json to be installed."
rust
`(,rust "cargo")
rust-cbindgen
- llvm-17
- clang-17
+ llvm-20
+ clang-20
perl
node-lts
python-wrapper
diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm
index 3f79d9862e..eb04e2eb86 100644
--- a/gnu/packages/golang.scm
+++ b/gnu/packages/golang.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016-2024 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016-2025 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Matthew Jordan <matthewjordandevops@yandex.com>
;;; Copyright © 2016 Andy Wingo <wingo@igalia.com>
;;; Copyright © 2016, 2019, 2021 Ludovic Courtès <ludo@gnu.org>
@@ -1012,6 +1012,17 @@ in the style of communicating sequential processes (@dfn{CSP}).")
;; as the bootstrap toolchain.
(alist-replace "go" (list go-1.21) (package-native-inputs go-1.21)))))
+(define %go-1.23-arm64-micro-architectures
+ ;; https://go.dev/wiki/MinimumRequirements#arm64
+ ;; Allowed values are v8.{0-9} and v9.{0-5}. This may be followed by an option
+ ;; specifying extensions implemented by target hardware. Valid options are
+ ;; ,lse and ,crypto.
+ ;; Match Guix's specifications and then rewrite in (guix transformations).
+ (append (map (lambda (suffix) (string-append "armv8" suffix "-a"))
+ '("" ".1" ".2" ".3" ".4" ".5" ".6" ".7" ".8" ".9"))
+ (map (lambda (suffix) (string-append "armv9" suffix "-a"))
+ '("" ".1" ".2" ".3" ".4" ".5"))))
+
(define-public go-1.23
(package
(inherit go-1.22)
@@ -1025,7 +1036,13 @@ in the style of communicating sequential processes (@dfn{CSP}).")
(commit (string-append "go" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "06c5cjjqk95p16cb6p8fgqqsddc1a1kj3w2m0na5v91gvwxbd0pq"))))))
+ (base32 "06c5cjjqk95p16cb6p8fgqqsddc1a1kj3w2m0na5v91gvwxbd0pq"))))
+ (properties
+ `((compiler-cpu-architectures
+ ("aarch64" ,@%go-1.23-arm64-micro-architectures)
+ ("armhf" ,@%go-1.17-arm-micro-architectures)
+ ("powerpc64le" ,@%go-1.17-powerpc64le-micro-architectures)
+ ("x86_64" ,@%go-1.18-x86_64-micro-architectures))))))
(define-public go-1.24
(package
diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm
index 7ace87bc11..f683115cb6 100644
--- a/gnu/packages/guile-xyz.scm
+++ b/gnu/packages/guile-xyz.scm
@@ -6978,25 +6978,24 @@ or @code{LuaBind} but for Scheme.")
(name "guile-cbor")
(version "0.1.0")
(source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://inqlab.net/git/guile-cbor.git")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256 (base32 "0bdqg3ifayf7m2j09lqrgdfprbdaa67azf09bcq9b4k71inxfnxl"))))
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://codeberg.org/pukkamustard/guile-cbor/")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0bdqg3ifayf7m2j09lqrgdfprbdaa67azf09bcq9b4k71inxfnxl"))))
(build-system gnu-build-system)
- (arguments `())
- (native-inputs
- (list autoconf automake pkg-config texinfo))
+ (native-inputs (list autoconf automake pkg-config texinfo))
(inputs (list guile-3.0))
(synopsis "Guile implementation of CBOR")
(description
- "The Concise Binary Object Representation (CBOR), as specified by RFC 8949, is
-a binary data serialization format. CBOR is similar to JSON but serializes to
-binary which is smaller and faster to generate and parse. This package provides
-a Guile implementation of CBOR.")
- (home-page "https://inqlab.net/git/guile-cbor.git")
+ "The Concise Binary Object Representation (CBOR), as specified by RFC
+8949, is a binary data serialization format. CBOR is similar to JSON but
+serializes to binary which is smaller and faster to generate and parse. This
+package provides a Guile implementation of CBOR.")
+ (home-page "https://codeberg.org/pukkamustard/guile-cbor/")
(license license:gpl3+)))
(define-public guile-qr-code
diff --git a/gnu/packages/haskell-apps.scm b/gnu/packages/haskell-apps.scm
index e626509067..5a1f654652 100644
--- a/gnu/packages/haskell-apps.scm
+++ b/gnu/packages/haskell-apps.scm
@@ -888,32 +888,20 @@ is programmed in Haskell.")
(define-public scroll
(package
(name "scroll")
- (version "1.20180421")
+ (version "1.20250228.2")
(source
(origin
(method url-fetch)
(uri (hackage-uri "scroll" version))
(sha256
(base32
- "0apzrvf99rskj4dbmn57jjxrsf19j436s8a09m950df5aws3a0wj"))))
+ "1p1741zqsxg017d08ym1clzqcdlai487wb6q12m1q7dr6i8c0gfj"))))
(build-system haskell-build-system)
- (properties '((upstream-name . "scroll")))
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (add-after 'install 'touch-static-output
- (lambda* (#:key outputs #:allow-other-keys)
- ;; The Haskell build system adds a "static" output by
- ;; default, and there is no way to override this until
- ;; <https://issues.guix.gnu.org/41569> is fixed. Without
- ;; this phase, the daemon complains because we do not
- ;; create the "static" output.
- (with-output-to-file (assoc-ref outputs "static")
- (lambda ()
- (display "static output not used\n")))
- #t)))))
+ (properties '((upstream-name . "scroll")
+ (updater-extra-inputs "ghc-base-compat")))
(inputs
- (list ghc-case-insensitive
+ (list ghc-base-compat
+ ghc-case-insensitive
ghc-data-default
ghc-ifelse
ghc-monad-loops
diff --git a/gnu/packages/haskell-xyz.scm b/gnu/packages/haskell-xyz.scm
index 6b8cce3cfc..fd7519b957 100644
--- a/gnu/packages/haskell-xyz.scm
+++ b/gnu/packages/haskell-xyz.scm
@@ -5,7 +5,7 @@
;;; Copyright © 2015, 2019 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016, 2018, 2019, 2021 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016, 2017 Nikita <nikita@n0.is>
-;;; Copyright © 2016, 2019, 2023 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2019, 2023, 2025 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017 David Craven <david@craven.ch>
;;; Copyright © 2017 Danny Milosavljevic <dannym@scratchpost.org>
@@ -7901,7 +7901,9 @@ between 2 and 3 times faster than the Mersenne Twister.")
"lib/UI/NCurses/Enums.chs"
"lib/UI/NCurses/Panel.chs")
(("<ncursesw/") "<"))
- #t)))
+ ;; KEY_EVENT doesn't appear in our ncurses.h
+ (substitute* "lib/UI/NCurses/Enums.chs"
+ ((".*KEY_EVENT.*") "")))))
#:cabal-revision
("1"
"1wfdy716s5p1sqp2gsg43x8wch2dxg0vmbbndlb2h3d8c9jzxnca")))
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 061cb934a4..2b6955b406 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -2289,50 +2289,6 @@ number of threads used in the threadpool-backed of common native libraries used
for scientific computing and data science (e.g. BLAS and OpenMP).")
(license license:bsd-3)))
-(define-public python-imbalanced-learn
- (package
- (name "python-imbalanced-learn")
- (version "0.12.2")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "imbalanced-learn" version))
- (sha256
- (base32 "1hgncab4g4xry7yl6wwsj1wmfnxbsajx6qmycvr28wdhvk75c358"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags '(list "-k"
- ;; Although we cannot satify the Tensorflow and Keras requirements
- ;; (python-keras >= 2.4.3 and tensorflow >= 2.4.3), all tests
- ;; besides these pass.
- "not balanced_batch_generator and not BalancedBatchGenerator")
- #:phases '(modify-phases %standard-phases
- (add-after 'unpack 'unbreak-tests
- (lambda _
- ;; Some tests require a home directory
- (setenv "HOME"
- (getcwd)))))))
- (propagated-inputs (list python-joblib python-numpy python-scikit-learn
- python-scipy python-threadpoolctl))
- (native-inputs (list python-black
- python-flake8
- python-keras
- python-mypy
- python-pandas
- python-pytest
- python-pytest-cov
- python-setuptools
- python-wheel
- tensorflow))
- (home-page "https://github.com/scikit-learn-contrib/imbalanced-learn")
- (synopsis "Toolbox for imbalanced dataset in machine learning")
- (description
- "This is a Python package offering a number of re-sampling
-techniques commonly used in datasets showing strong between-class imbalance.
-It is compatible with @code{scikit-learn}.")
- (license license:expat)))
-
(define-public python-hdbscan
(package
(name "python-hdbscan")
@@ -4148,213 +4104,6 @@ any function). It currently contains the interface and IO code from the Shap
project, and it will potentially also do the same for the Lime project.")
(license license:expat)))
-(define-public python-keras-applications
- (package
- (name "python-keras-applications")
- (version "1.0.8")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "Keras_Applications" version))
- (sha256
- (base32
- "1rcz31ca4axa6kzhjx4lwqxbg4wvlljkj8qj9a7p9sfd5fhzjyam"))))
- (build-system python-build-system)
- ;; The tests require Keras, but this package is needed to build Keras.
- (arguments '(#:tests? #f))
- (propagated-inputs
- (list python-h5py python-numpy))
- (native-inputs
- (list python-pytest python-pytest-cov
- python-pytest-xdist))
- (home-page "https://github.com/keras-team/keras-applications")
- (synopsis "Reference implementations of popular deep learning models")
- (description
- "This package provides reference implementations of popular deep learning
-models for use with the Keras deep learning framework.")
- (license license:expat)))
-
-(define-public python-keras-preprocessing
- (package
- (name "python-keras-preprocessing")
- (version "1.1.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "Keras_Preprocessing" version))
- (sha256
- (base32
- "1r98nm4k1svsqjyaqkfk23i31bl1kcfcyp7094yyj3c43phfp3as"))))
- (build-system python-build-system)
- (propagated-inputs
- (list python-numpy python-six))
- (native-inputs
- (list python-pandas
- python-pillow
- python-pytest
- python-pytest-cov
- python-pytest-xdist
- tensorflow))
- (home-page "https://github.com/keras-team/keras-preprocessing/")
- (synopsis "Data preprocessing and augmentation for deep learning models")
- (description
- "Keras Preprocessing is the data preprocessing and data augmentation
-module of the Keras deep learning library. It provides utilities for working
-with image data, text data, and sequence data.")
- (license license:expat)))
-
-(define-public python-keras
- (package
- (name "python-keras")
- (version "2.3.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "Keras" version))
- (sha256
- (base32
- "1k68xd8n2y9ldijggjc8nn4d6d1axw0p98gfb0fmm8h641vl679j"))
- (modules '((guix build utils)))
- (snippet
- '(substitute* '("keras/callbacks/callbacks.py"
- "keras/engine/training_utils.py"
- "keras/engine/training.py"
- "keras/engine/training_generator.py"
- "keras/utils/generic_utils.py")
- (("from collections import Iterable")
- "from collections.abc import Iterable")
- (("collections.Container")
- "collections.abc.Container")
- (("collections.Mapping")
- "collections.abc.Mapping")
- (("collections.Sequence")
- "collections.abc.Sequence")))))
- (build-system python-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'tf-compatibility
- (lambda _
- (substitute* "keras/backend/tensorflow_backend.py"
- (("^get_graph = .*")
- "get_graph = tf.get_default_graph")
- (("tf.compat.v1.nn.fused_batch_norm")
- "tf.nn.fused_batch_norm")
- ;; categorical_crossentropy does not support axis
- (("from_logits=from_logits, axis=axis")
- "from_logits=from_logits")
- ;; dropout accepts a level number, not a named rate argument.
- (("dropout\\(x, rate=level,")
- "dropout(x, level,")
- (("return x.shape.rank")
- "return len(x.shape)"))))
- (add-after 'unpack 'hdf5-compatibility
- (lambda _
- ;; The truth value of an array with more than one element is ambiguous.
- (substitute* "tests/keras/utils/io_utils_test.py"
- ((" *assert .* == \\[b'(asd|efg).*") ""))
- (substitute* "tests/test_model_saving.py"
- (("h5py.File\\('does not matter',")
- "h5py.File('does not matter', 'w',"))
- (substitute* "keras/utils/io_utils.py"
- (("h5py.File\\('in-memory-h5py', driver='core', backing_store=False\\)")
- "h5py.File('in-memory-h5py', 'w', driver='core', backing_store=False)")
- (("h5file.fid.get_file_image")
- "h5file.id.get_file_image"))
- (substitute* "keras/engine/saving.py"
- (("\\.decode\\('utf-?8'\\)") ""))))
- (add-after 'unpack 'delete-unavailable-backends
- (lambda _
- (delete-file "keras/backend/theano_backend.py")
- (delete-file "keras/backend/cntk_backend.py")))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; These tests attempt to download data files from the internet.
- (delete-file "tests/integration_tests/test_datasets.py")
- (delete-file "tests/integration_tests/imagenet_utils_test.py")
- (invoke "python" "-m" "pytest" "tests"
- "-p" "no:pep8"
- ;; FIXME: python-build-system lacks PARALLEL-TESTS?
- "-n" (number->string (parallel-job-count))
- ;; This one uses the theano backend that we don't have.
- "--ignore=tests/test_api.py"
- "--ignore=tests/keras/backend/backend_test.py"
- ;; Our Tensorflow version does not have the coder ops library.
- "--ignore=tests/keras/callbacks/callbacks_test.py"
- ;; ...nor do we have tensorboard
- "--ignore=tests/keras/callbacks/tensorboard_test.py"
- "-k"
- (string-append
- ;; See https://github.com/keras-team/keras/pull/7033
- "not test_TimeDistributed_learning_phase "
- ;; XXX fails because no closure is provided
- "and not test_func_dump_and_load_backwards_compat "
- ;; XXX real bug? These are all tests that fail due to
- ;; shape mismatch, e.g. "got logits shape [12,3] and
- ;; labels shape [9]"
- "and not test_model_with_crossentropy_losses_channels_first "
- "and not test_masking_correctness_output_size_not_equal_to_first_state_size "
- "and not test_convolutional_recurrent "
- "and not test_axis "
-
- ;; XXX fails because of 3/15 values have unexpected differences.
- "and not test_masking_correctness_output_not_equal_to_first_state "
- ;; XXX fails because of a difference of about 0.1
- "and not test_sample_weighted "
- ;; XXX fails because of a difference of about 0.3
- "and not test_scalar_weighted "
- ;; XXX fails because of a difference of about 0.2
- "and not test_unweighted "
-
- ;; XXX I cannot reproduce this in an interactive
- ;; Python session, because l2_norm works just fine.
- "and not test_weighted " ;TestCosineSimilarity
- "and not test_config " ;TestCosineSimilarity
-
- ;; The following test fails only in the build
- ;; container; skip it.
- "and not test_selu "
- ;; The following test was found flaky and removed in
- ;; recent versions.
- "and not test_stateful_metrics"))))))))
- (propagated-inputs
- (list python-h5py
- python-keras-applications
- python-keras-preprocessing
- python-numpy
- python-pydot
- python-pyyaml
- python-scipy
- python-six
- tensorflow
- graphviz))
- (native-inputs
- (list python-flaky
- python-markdown
- python-pandas
- python-pytest
- python-pytest-cov
- python-pytest-timeout
- python-pytest-xdist
- python-pyux
- python-sphinx
- python-requests))
- (home-page "https://keras.io/")
- (synopsis "High-level deep learning framework")
- (description "Keras is a high-level neural networks API, written in Python
-and capable of running on top of TensorFlow. It was developed with a focus on
-enabling fast experimentation. Use Keras if you need a deep learning library
-that:
-@itemize
-@item Allows for easy and fast prototyping (through user friendliness,
- modularity, and extensibility).
-@item Supports both convolutional networks and recurrent networks, as well as
- combinations of the two.
-@item Runs seamlessly on CPU and GPU.
-@end itemize\n")
- (license license:expat)))
-
(define-public gloo
(let ((version "0.0.0") ; no proper version tag
(commit "81925d1c674c34f0dc34dd9a0f2151c1b6f701eb")
diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm
index 6ac17d3733..765836cf65 100644
--- a/gnu/packages/protobuf.scm
+++ b/gnu/packages/protobuf.scm
@@ -465,6 +465,17 @@ from protobuf specification files.")
mechanism for serializing structured data.")
(license license:bsd-3)))
+(define-public python-protobuf-4
+ (package/inherit python-protobuf-5
+ (name "python-protobuf")
+ (version "4.21.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "protobuf" version))
+ (sha256
+ (base32 "1pabwidv12r73fy0jlslpgi60zd1lbx9rjnb23kgdm8wcsjl043b"))))))
+
(define-public python-protobuf
(package
(name "python-protobuf")
diff --git a/gnu/packages/rpc.scm b/gnu/packages/rpc.scm
index c083074cc7..36c937dcef 100644
--- a/gnu/packages/rpc.scm
+++ b/gnu/packages/rpc.scm
@@ -49,10 +49,21 @@
#:use-module (gnu packages tls)
#:use-module (srfi srfi-1))
+;; XXX: Starting from version 1.47.5, opencensus-proto is required.
+;; The package is already deprecated upstream, so it's probably not
+;; worth it spending time packaging it in Guix, just inject the source
+;; instead, to also avoid us a recursive git fetch.
+(define opencensus-proto-for-grpc-source
+ (origin
+ (method url-fetch)
+ (uri "https://github.com/census-instrumentation/opencensus-proto/archive/v0.3.0.tar.gz")
+ (sha256
+ (base32 "1c3jfl1zgjhhqyqii1wils2k05akkvrw50xmf0q0rs2r885kzqdp"))))
+
(define-public grpc
(package
(name "grpc")
- (version "1.34.0")
+ (version "1.52.2")
(outputs '("out" "static"))
(source (origin
(method git-fetch)
@@ -62,7 +73,7 @@
(file-name (git-file-name name version))
(sha256
(base32
- "1fs407hnlnm0b8sncjwys9rc7ia5nb7wxrpx39nq3pzzfs1lv3vq"))))
+ "09165p6rh5xvcnnwnmy22lwdfchgjg39y02rwj6zg4rzfps8cb43"))))
(build-system cmake-build-system)
(arguments
(list
@@ -80,6 +91,11 @@
"-DCMAKE_VERBOSE_MAKEFILE=ON")
#:phases
#~(modify-phases %standard-phases
+ (add-after 'unpack 'unpack-third-party
+ (lambda _
+ (mkdir-p "third_party/opencensus-proto/src")
+ (invoke "tar" "xvf" #+opencensus-proto-for-grpc-source
+ "-C" "third_party/opencensus-proto/src")))
(add-before 'configure 'configure-shared
(lambda* (#:key configure-flags #:allow-other-keys)
(mkdir "../build-shared")
@@ -125,24 +141,6 @@ mile of distributed computing to connect devices, mobile applications and
browsers to backend services.")
(license license:asl2.0)))
-(define-public grpc-for-python-grpcio
- (package
- (inherit grpc)
- (name "grpc")
- (version "1.47.0")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/grpc/grpc")
- (commit (string-append "v" version))
- (recursive? #true)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1nl2d92f3576m69991d7gwyk1giavm04fagr612yjh90rni01ikw"))))
- (inputs
- (list abseil-cpp-20211102.0 c-ares/cmake openssl re2 zlib))))
-
;; Some packages require this older version.
(define-public grpc-1.16.1
(package
@@ -200,14 +198,13 @@ type information of gRPC.")
(define-public python-grpcio
(package
(name "python-grpcio")
- (version "1.47.0")
+ (version "1.52.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "grpcio" version))
(sha256
- (base32
- "00gqhz0b1sqnfx6zy7h5z41b6mpsq57r1f3p95xradcvmdgskfsx"))
+ (base32 "1nsgm8q4yahzdab4m3irffdw9zklq4kb7f8hki1ayfgw54ysim55"))
(modules '((guix build utils) (ice-9 ftw)))
(snippet
'(begin
@@ -252,7 +249,7 @@ type information of gRPC.")
(substitute* '("setup.py" "src/python/grpcio/commands.py")
(("'cc'") "'gcc'")))))))
(inputs
- (list abseil-cpp-20211102.0 c-ares grpc-for-python-grpcio openssl re2 zlib))
+ (list abseil-cpp-cxxstd11 c-ares grpc openssl re2 zlib))
(native-inputs
(list python-cython python-setuptools python-wheel))
(propagated-inputs
@@ -266,29 +263,32 @@ with the HTTP/2-based RPC framework gRPC.")
(define-public python-grpcio-tools
(package
(name "python-grpcio-tools")
- (version "1.47.0")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "grpcio-tools" version))
- (modules '((guix build utils)))
- (snippet
- ;; This file is auto-generated.
- '(delete-file "grpc_tools/_protoc_compiler.cpp"))
- (sha256
- (base32
- "0g3xwv55lvf5w64zb44dipwqz7729cbqc7rib77ddqab91w56jzn"))))
- (build-system python-build-system)
+ (version "1.52.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "grpcio-tools" version))
+ (modules '((guix build utils)))
+ (snippet
+ ;; This file is auto-generated.
+ '(delete-file "grpc_tools/_protoc_compiler.cpp"))
+ (sha256
+ (base32 "0m5xwhz3l0n3b1bzjncynwflnc5iyv4xrjq046ppcck4rpj9fgn0"))))
+ (build-system pyproject-build-system)
(arguments
- (list #:phases #~(modify-phases %standard-phases
- (add-after 'unpack 'configure
- (lambda _
- (setenv "GRPC_PYTHON_BUILD_WITH_CYTHON" "1"))))))
- (native-inputs (list python-cython))
- (propagated-inputs (list python-grpcio python-protobuf))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'configure
+ (lambda _
+ (setenv "GRPC_PYTHON_BUILD_WITH_CYTHON" "1"))))))
+ (native-inputs (list python-cython python-setuptools python-wheel))
+ (propagated-inputs (list python-grpcio python-protobuf-4))
(home-page "https://grpc.io")
(synopsis "Protobuf code generator for gRPC")
- (description "The gRPC tools for Python provide a special plugin for
-generating server and client code from @file{.proto} service definitions.")
+ (description
+ "The gRPC tools for Python provide a special plugin for generating server
+and client code from @file{.proto} service definitions.")
(license license:asl2.0)))
(define-public apache-thrift
diff --git a/gnu/packages/tbb.scm b/gnu/packages/tbb.scm
index 5fdc41553b..47f8d4a09a 100644
--- a/gnu/packages/tbb.scm
+++ b/gnu/packages/tbb.scm
@@ -40,7 +40,7 @@
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/oneapi-src/oneTBB")
+ (url "https://github.com/uxlfoundation/oneTBB/")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -79,14 +79,14 @@
((".*test_multifunction_node.*") "")
((".*test_async_node.*") ""))))))
(else '())))))
- (home-page "https://www.threadingbuildingblocks.org")
+ (home-page "https://uxlfoundation.github.io/oneTBB/")
(synopsis "C++ library for parallel programming")
(description
- "Threading Building Blocks (TBB) is a C++ runtime library that abstracts
-the low-level threading details necessary for optimal multi-core performance.
-It uses common C++ templates and coding style to eliminate tedious threading
-implementation work. It provides parallel loop constructs, asynchronous
-tasks, synchronization primitives, atomic operations, and more.")
+ "@acronym{TBB, Threading Building Blocks} is a C++ runtime library that
+abstracts the low-level threading details necessary for optimal multi-core
+performance. It uses common C++ templates and coding style to eliminate
+tedious threading implementation work. It provides parallel loop constructs,
+asynchronous tasks, synchronization primitives, atomic operations, and more.")
(license asl2.0)))
(define-public python-tbb
generated by cgit v1.2.3 (git 2.50.1) at 2025-08-06 14:25:49 +0000